RSAT 2011: regulatory sequence analysis tools

by Thomas-Chollier, Morgane, Defrance, Matthieu, Medina-Rivera, Alejandra, Sand, Olivier, Herrmann, Carl, Thieffry, Denis, van Helden, Jacques
Published 2011

Evidence classification of high-throughput protocols and confidence integration in RegulonDB

by Weiss, Verena, Medina-Rivera, Alejandra, Huerta, Araceli M., Santos-Zavaleta, Alberto, Salgado, Heladia, Morett, Enrique, Collado-Vides, Julio
Published 2013

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders

by Uusküla-Reimand, Liis, Hou, Huayun, Samavarchi-Tehrani, Payman, Rudan, Matteo Vietri, Liang, Minggao, Medina-Rivera, Alejandra, Mohammed, Hisham, Schmidt, Dominic, Schwalie, Petra, Young, Edwin J., Reimand, Jüri, Hadjur, Suzana, Gingras, Anne-Claude, Wilson, Michael D.
Published 2016

MACE: model based analysis of ChIP-exo

by Wang, Liguo, Chen, Junsheng, Wang, Chen, Uusküla-Reimand, Liis, Chen, Kaifu, Medina-Rivera, Alejandra, Young, Edwin J., Zimmermann, Michael T., Yan, Huihuang, Sun, Zhifu, Zhang, Yuji, Wu, Stephen T., Huang, Haojie, Wilson, Michael D., Kocher, Jean-Pierre A., Li, Wei
Published 2014

RSAT 2015: Regulatory Sequence Analysis Tools

by Medina-Rivera, Alejandra, Defrance, Matthieu, Sand, Olivier, Herrmann, Carl, Castro-Mondragon, Jaime A., Delerce, Jeremy, Jaeger, Sébastien, Blanchet, Christophe, Vincens, Pierre, Caron, Christophe, Staines, Daniel M., Contreras-Moreira, Bruno, Artufel, Marie, Charbonnier-Khamvongsa, Lucie, Hernandez, Céline, Thieffry, Denis, Thomas-Chollier, Morgane, van Helden, Jacques
Published 2015

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

by Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, Muñiz-Rascado, Luis, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Martínez-Flores, Irma, Pannier, Lucia, Castro-Mondragón, Jaime Abraham, Medina-Rivera, Alejandra, Solano-Lira, Hilda, Bonavides-Martínez, César, Pérez-Rueda, Ernesto, Alquicira-Hernández, Shirley, Porrón-Sotelo, Liliana, López-Fuentes, Alejandra, Hernández-Koutoucheva, Anastasia, Moral-Chávez, Víctor Del, Rinaldi, Fabio, Collado-Vides, Julio
Published 2016

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

by Ballester, Benoit, Medina-Rivera, Alejandra, Schmidt, Dominic, Gonzàlez-Porta, Mar, Carlucci, Matthew, Chen, Xiaoting, Chessman, Kyle, Faure, Andre J, Funnell, Alister PW, Goncalves, Angela, Kutter, Claudia, Lukk, Margus, Menon, Suraj, McLaren, William M, Stefflova, Klara, Watt, Stephen, Weirauch, Matthew T, Crossley, Merlin, Marioni, John C, Odom, Duncan T, Flicek, Paul, Wilson, Michael D
Published 2014

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

by Salgado, Heladia, Peralta-Gil, Martin, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, García-Sotelo, Jair S., Weiss, Verena, Solano-Lira, Hilda, Martínez-Flores, Irma, Medina-Rivera, Alejandra, Salgado-Osorio, Gerardo, Alquicira-Hernández, Shirley, Alquicira-Hernández, Kevin, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Huerta, Araceli M., Bonavides-Martínez, César, Balderas-Martínez, Yalbi I., Pannier, Lucia, Olvera, Maricela, Labastida, Aurora, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, del Moral-Chávez, Victor, Hernández-Alvarez, Alfredo, Morett, Enrique, Collado-Vides, Julio
Published 2013