EPEPT: A web service for enhanced P-value estimation in permutation tests

by Knijnenburg, Theo A, Lin, Jake, Rovira, Hector, Boyle, John, Shmulevich, Ilya
Published 2011

Integrated analysis of transcript-level regulation of metabolism reveals disease-relevant nodes of the human metabolic network

by Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Published 2014

Transcriptomics profiling of human SGBS adipogenesis

by Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Published 2014

ChIP-seq profiling of the active chromatin marker H3K4me3 and PPARγ, CEBPα and LXR target genes in human SGBS adipocytes

by Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Published 2014

Fastbreak: a tool for analysis and visualization of structural variations in genomic data

by Bressler, Ryan, Lin, Jake, Eakin, Andrea, Robinson, Thomas, Kreisberg, Richard, Rovira, Hector, Knijnenburg, Theo, Boyle, John, Shmulevich, Ilya
Published 2012

POMO - Plotting Omics analysis results for Multiple Organisms

by Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija
Published 2013

High-throughput Tetrad Analysis

by Ludlow, Catherine L., Scott, Adrian C., Cromie, Gareth A., Jeffery, Eric W., Sirr, Amy, May, Patrick, Lin, Jake, Gilbert, Teresa L., Hays, Michelle, Dudley, Aimée M.
Published 2013

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

by Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Published 2014

Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease

by Krishna, Abhimanyu, Biryukov, Maria, Trefois, Christophe, Antony, Paul MA, Hussong, Rene, Lin, Jake, Heinäniemi, Merja, Glusman, Gustavo, Köglsberger, Sandra, Boyd, Olga, van den Berg, Bart HJ, Linke, Dennis, Huang, David, Wang, Kai, Hood, Leroy, Tholey, Andreas, Schneider, Reinhard, Galas, David J, Balling, Rudi, May, Patrick
Published 2014