Properties of Fixed-Fixed Models and Alternatives in Presence-Absence Data Analysis

by Kallio, Aleksi
Published 2016

Randomization techniques for assessing the significance of gene periodicity results

by Kallio, Aleksi, Vuokko, Niko, Ojala, Markus, Haiminen, Niina, Mannila, Heikki
Published 2011

Optimized detection of transcription factor-binding sites in ChIP-seq experiments

by Elo, Laura L., Kallio, Aleksi, Laajala, Teemu D., Hawkins, R. David, Korpelainen, Eija, Aittokallio, Tero
Published 2012

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud

by Niemenmaa, Matti, Kallio, Aleksi, Schumacher, André, Klemelä, Petri, Korpelainen, Eija, Heljanko, Keijo
Published 2012

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop

by Schumacher, André, Pireddu, Luca, Niemenmaa, Matti, Kallio, Aleksi, Korpelainen, Eija, Zanetti, Gianluigi, Heljanko, Keijo
Published 2014

BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences

by Dahlö, Martin, Haziza, Frédéric, Kallio, Aleksi, Korpelainen, Eija, Bongcam-Rudloff, Erik, Spjuth, Ola
Published 2015

MicroRNA Expression Profiling Reveals MiRNA Families Regulating Specific Biological Pathways in Mouse Frontal Cortex and Hippocampus

by Juhila, Juuso, Sipilä, Tessa, Icay, Katherine, Nicorici, Daniel, Ellonen, Pekka, Kallio, Aleksi, Korpelainen, Eija, Greco, Dario, Hovatta, Iiris
Published 2011

POMO - Plotting Omics analysis results for Multiple Organisms

by Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija
Published 2013

Recommendations on e-infrastructures for next-generation sequencing

by Spjuth, Ola, Bongcam-Rudloff, Erik, Dahlberg, Johan, Dahlö, Martin, Kallio, Aleksi, Pireddu, Luca, Vezzi, Francesco, Korpelainen, Eija
Published 2016

Experiences with workflows for automating data-intensive bioinformatics

by Spjuth, Ola, Bongcam-Rudloff, Erik, Hernández, Guillermo Carrasco, Forer, Lukas, Giovacchini, Mario, Guimera, Roman Valls, Kallio, Aleksi, Korpelainen, Eija, Kańduła, Maciej M, Krachunov, Milko, Kreil, David P, Kulev, Ognyan, Łabaj, Paweł P., Lampa, Samuel, Pireddu, Luca, Schönherr, Sebastian, Siretskiy, Alexey, Vassilev, Dimitar
Published 2015