Dataset integration identifies transcriptional regulation of microRNA genes by PPARγ in differentiating mouse 3T3-L1 adipocytes

by John, Elisabeth, Wienecke-Baldacchino, Anke, Liivrand, Maria, Heinäniemi, Merja, Carlberg, Carsten, Sinkkonen, Lasse
Published 2012

Integrated analysis of transcript-level regulation of metabolism reveals disease-relevant nodes of the human metabolic network

by Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Published 2014

Transcriptomics profiling of human SGBS adipogenesis

by Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Published 2014

ChIP-seq profiling of the active chromatin marker H3K4me3 and PPARγ, CEBPα and LXR target genes in human SGBS adipocytes

by Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Published 2014

Integrated metabolic modelling reveals cell-type specific epigenetic control points of the macrophage metabolic network

by Pacheco, Maria Pires, John, Elisabeth, Kaoma, Tony, Heinäniemi, Merja, Nicot, Nathalie, Vallar, Laurent, Bueb, Jean-Luc, Sinkkonen, Lasse, Sauter, Thomas
Published 2015

Prenatal Metformin Exposure in a Maternal High Fat Diet Mouse Model Alters the Transcriptome and Modifies the Metabolic Responses of the Offspring

by Salomäki, Henriikka, Heinäniemi, Merja, Vähätalo, Laura H., Ailanen, Liisa, Eerola, Kim, Ruohonen, Suvi T., Pesonen, Ullamari, Koulu, Markku
Published 2014

Gene pair signatures in cell type transcriptomes reveal lineage control

by Heinäniemi, Merja, Nykter, Matti, Kramer, Roger, Wienecke-Baldacchino, Anke, Sinkkonen, Lasse, Zhou, Joseph Xu, Kreisberg, Richard, Kauffman, Stuart A., Huang, Sui, Shmulevich, Ilya
Published 2013

Transcription-coupled genetic instability marks acute lymphoblastic leukemia structural variation hotspots

by Heinäniemi, Merja, Vuorenmaa, Tapio, Teppo, Susanna, Kaikkonen, Minna U, Bouvy-Liivrand, Maria, Mehtonen, Juha, Niskanen, Henri, Zachariadis, Vasilios, Laukkanen, Saara, Liuksiala, Thomas, Teittinen, Kaisa, Lohi, Olli
Published 2016

Epigenetic control of a VDR-governed feed-forward loop that regulates p21(waf1/cip1) expression and function in non-malignant prostate cells

by Thorne, James L., Maguire, Orla, Doig, Craig L., Battaglia, Sebastiano, Fehr, Leah, Sucheston, Lara E., Heinaniemi, Merja, O’Neill, Laura P., McCabe, Christopher J., Turner, Bryan M., Carlberg, Carsten, Campbell, Moray J.
Published 2011

The Effects of Sequence Variation on Genome-wide NRF2 Binding—New Target Genes and Regulatory SNPs

by Kuosmanen, Suvi M., Viitala, Sari, Laitinen, Tuomo, Peräkylä, Mikael, Pölönen, Petri, Kansanen, Emilia, Leinonen, Hanna, Raju, Suresh, Wienecke-Baldacchino, Anke, Närvänen, Ale, Poso, Antti, Heinäniemi, Merja, Heikkinen, Sami, Levonen, Anna-Liisa
Published 2016

Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease

by Krishna, Abhimanyu, Biryukov, Maria, Trefois, Christophe, Antony, Paul MA, Hussong, Rene, Lin, Jake, Heinäniemi, Merja, Glusman, Gustavo, Köglsberger, Sandra, Boyd, Olga, van den Berg, Bart HJ, Linke, Dennis, Huang, David, Wang, Kai, Hood, Leroy, Tholey, Andreas, Schneider, Reinhard, Galas, David J, Balling, Rudi, May, Patrick
Published 2014