Promoter analysis by saturation mutagenesis

by Baliga, Nitin S
Published 2001

Architecture for interoperable software in biology

by Bare, James Christopher, Baliga, Nitin S.
Published 2014

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

by Reiss, David J, Baliga, Nitin S, Bonneau, Richard
Published 2006

The Gaggle: An open-source software system for integrating bioinformatics software and data sources

by Shannon, Paul T, Reiss, David J, Bonneau, Richard, Baliga, Nitin S
Published 2006

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications

by Bare, J Christopher, Shannon, Paul T, Schmid, Amy K, Baliga, Nitin S
Published 2007

Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon

by Schmid, Amy K., Pan, Min, Sharma, Kriti, Baliga, Nitin S.
Published 2011

miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling

by Plaisier, Christopher L., Bare, J. Christopher, Baliga, Nitin S.
Published 2011

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

by Bonneau, Richard, Reiss, David J, Shannon, Paul, Facciotti, Marc, Hood, Leroy, Baliga, Nitin S, Thorsson, Vesteinn
Published 2006

Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1

by Bonneau, Richard, Baliga, Nitin S, Deutsch, Eric W, Shannon, Paul, Hood, Leroy
Published 2004

A Role for Programmed Cell Death in the Microbial Loop

by Orellana, Mónica V., Pang, Wyming L., Durand, Pierre M., Whitehead, Kenia, Baliga, Nitin S.
Published 2013

Intracytoplasmic Copper Homeostasis Controls Cytochrome c Oxidase Production

by Ekici, Seda, Turkarslan, Serdar, Pawlik, Grzegorz, Dancis, Andrew, Baliga, Nitin S., Koch, Hans-Georg, Daldal, Fevzi
Published 2014

cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism

by Reiss, David J., Plaisier, Christopher L., Wu, Wei-Ju, Baliga, Nitin S.
Published 2015

Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis

by Peterson, Eliza J.R., Ma, Shuyi, Sherman, David R., Baliga, Nitin S.
Published 2016

Data-driven integration of genome-scale regulatory and metabolic network models

by Imam, Saheed, Schäuble, Sascha, Brooks, Aaron N., Baliga, Nitin S., Price, Nathan D.
Published 2015

Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life

by Zaramela, Livia S., Vêncio, Ricardo Z. N., ten-Caten, Felipe, Baliga, Nitin S., Koide, Tie
Published 2014

Inference of Expanded Lrp-Like Feast/Famine Transcription Factor Targets in a Non-Model Organism Using Protein Structure-Based Prediction

by Ashworth, Justin, Plaisier, Christopher L., Lo, Fang Yin, Reiss, David J., Baliga, Nitin S.
Published 2014

Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers

by Ashworth, Justin, Bernard, Brady, Reynolds, Sheila, Plaisier, Christopher L., Shmulevich, Ilya, Baliga, Nitin S.
Published 2014

Niche adaptation by expansion and reprogramming of general transcription factors

by Turkarslan, Serdar, Reiss, David J, Gibbins, Goodwin, Su, Wan Lin, Pan, Min, Bare, J Christopher, Plaisier, Christopher L, Baliga, Nitin S
Published 2011

An integrated systems approach for understanding cellular responses to gamma radiation

by Whitehead, Kenia, Kish, Adrienne, Pan, Min, Kaur, Amardeep, Reiss, David J, King, Nichole, Hohmann, Laura, DiRuggiero, Jocelyne, Baliga, Nitin S
Published 2006

Global analysis of mRNA stability in Mycobacterium tuberculosis

by Rustad, Tige R., Minch, Kyle J., Brabant, William, Winkler, Jessica K., Reiss, David J., Baliga, Nitin S., Sherman, David R.
Published 2013