Prediction of effective genome size in metagenomic samples

by Raes, Jeroen, Korbel, Jan O, Lercher, Martin J, von Mering, Christian, Bork, Peer
Published 2007

DELLY: structural variant discovery by integrated paired-end and split-read analysis

by Rausch, Tobias, Zichner, Thomas, Schlattl, Andreas, Stütz, Adrian M., Benes, Vladimir, Korbel, Jan O.
Published 2012

Negative Selection and Chromosome Instability Induced by Mad2 Overexpression Delay Breast Cancer but Facilitate Oncogene-Independent Outgrowth

by Rowald, Konstantina, Mantovan, Martina, Passos, Joana, Buccitelli, Christopher, Mardin, Balca R., Korbel, Jan O., Jechlinger, Martin, Sotillo, Rocio
Published 2016

Systematic Association of Genes to Phenotypes by Genome and Literature Mining

by Korbel, Jan O, Doerks, Tobias, Jensen, Lars J, Perez-Iratxeta, Carolina, Kaczanowski, Szymon, Hooper, Sean D, Andrade, Miguel A, Bork, Peer
Published 2005

Global Identification and Characterization of Transcriptionally Active Regions in the Rice Genome

by Li, Lei, Wang, Xiangfeng, Sasidharan, Rajkumar, Stolc, Viktor, Deng, Wei, He, Hang, Korbel, Jan, Chen, Xuewei, Tongprasit, Waraporn, Ronald, Pamela, Chen, Runsheng, Gerstein, Mark, Wang Deng, Xing
Published 2007

Next-generation sequencing-based detection of germline L1-mediated transductions

by Tica, Jelena, Lee, Eunjung, Untergasser, Andreas, Meiers, Sascha, Garfield, David A., Gokcumen, Omer, Furlong, Eileen E.M., Park, Peter J., Stütz, Adrian M., Korbel, Jan O.
Published 2016

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

by Cannavò, Enrico, Khoueiry, Pierre, Garfield, David A., Geeleher, Paul, Zichner, Thomas, Gustafson, E. Hilary, Ciglar, Lucia, Korbel, Jan O., Furlong, Eileen E.M.
Published 2016

The Genomic and Transcriptomic Landscape of a HeLa Cell Line

by Landry, Jonathan J. M., Pyl, Paul Theodor, Rausch, Tobias, Zichner, Thomas, Tekkedil, Manu M., Stütz, Adrian M., Jauch, Anna, Aiyar, Raeka S., Pau, Gregoire, Delhomme, Nicolas, Gagneur, Julien, Korbel, Jan O., Huber, Wolfgang, Steinmetz, Lars M.
Published 2013

Heterogeneity of ERG expression in prostate cancer: a large section mapping study of entire prostatectomy specimens from 125 patients

by Tsourlakis, Maria-Christina, Stender, Annegret, Quaas, Alexander, Kluth, Martina, Wittmer, Corinna, Haese, Alexander, Graefen, Markus, Steurer, Stefan, Simon, Ronald, Korbel, Jan, Weischenfeldt, Joachim, Huland, Hartwig, Sauter, Guido, Schlomm, Thorsten, Minner, Sarah
Published 2016

A cell-based model system links chromothripsis with hyperploidy

by Mardin, Balca R, Drainas, Alexandros P, Waszak, Sebastian M, Weischenfeldt, Joachim, Isokane, Mayumi, Stütz, Adrian M, Raeder, Benjamin, Efthymiopoulos, Theocharis, Buccitelli, Christopher, Segura-Wang, Maia, Northcott, Paul, Pfister, Stefan M, Lichter, Peter, Ellenberg, Jan, Korbel, Jan O
Published 2015

Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms

by Abyzov, Alexej, Li, Shantao, Kim, Daniel Rhee, Mohiyuddin, Marghoob, Stütz, Adrian M., Parrish, Nicholas F., Mu, Xinmeng Jasmine, Clark, Wyatt, Chen, Ken, Hurles, Matthew, Korbel, Jan O., Lam, Hugo Y. K., Lee, Charles, Gerstein, Mark B.
Published 2015

A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans

by Stewart, Chip, Kural, Deniz, Strömberg, Michael P., Walker, Jerilyn A., Konkel, Miriam K., Stütz, Adrian M., Urban, Alexander E., Grubert, Fabian, Lam, Hugo Y. K., Lee, Wan-Ping, Busby, Michele, Indap, Amit R., Garrison, Erik, Huff, Chad, Xing, Jinchuan, Snyder, Michael P., Jorde, Lynn B., Batzer, Mark A., Korbel, Jan O., Marth, Gabor T.
Published 2011

ICGC PedBrain - dissecting the genomic complexity underlying medulloblastoma using whole-genome sequencing

by Jäger, Natalie, Jones, David TW, Kool, Marcel, Zichner, Thomas, Hutter, Barbara, Sultan, Marc, Cho, Yoon-Jae, Pugh, Trevor J, Hovestadt, Volker, Stütz, Adrian M, Rausch, Tobias, Warnatz, Hans-Jörg, Brors, Benedikt, Northcott, Paul A, Taylor, Michael D, Meyerson, Matthew, Pomeroy, Scott L, Yaspo, Marie-Laure, Korbel, Jan O, Korshunov, Andrey, Eils, Roland, Pfister, Stefan M, Lichter, Peter
Published 2012

Immortalization capacity of HPV types is inversely related to chromosomal instability

by Schütze, Denise M., Krijgsman, Oscar, Snijders, Peter J.F., Ylstra, Bauke, Weischenfeldt, Joachim, Mardin, Balca R., Stütz, Adrian M., Korbel, Jan O., de Winter, Johan P., Meijer, Chris J.L.M., Quint, Wim G.V., Bosch, Leontien, Wilting, Saskia M., Steenbergen, Renske D.M.
Published 2016

Exome sequencing of osteosarcoma reveals mutation signatures reminiscent of BRCA deficiency

by Kovac, Michal, Blattmann, Claudia, Ribi, Sebastian, Smida, Jan, Mueller, Nikola S., Engert, Florian, Castro-Giner, Francesc, Weischenfeldt, Joachim, Kovacova, Monika, Krieg, Andreas, Andreou, Dimosthenis, Tunn, Per-Ulf, Dürr, Hans Roland, Rechl, Hans, Schaser, Klaus-Dieter, Melcher, Ingo, Burdach, Stefan, Kulozik, Andreas, Specht, Katja, Heinimann, Karl, Fulda, Simone, Bielack, Stefan, Jundt, Gernot, Tomlinson, Ian, Korbel, Jan O., Nathrath, Michaela, Baumhoer, Daniel
Published 2015

A novel autosomal recessive TERT T1129P mutation in a dyskeratosis congenita family leads to cellular senescence and loss of CD34+ hematopoietic stem cells not reversible by mTOR-i...

by Stockklausner, Clemens, Raffel, Simon, Klermund, Julia, Bandapalli, Obul Reddy, Beier, Fabian, Brümmendorf, Tim H., Bürger, Friederike, Sauer, Sven W., Hoffmann, Georg F., Lorenz, Holger, Tagliaferri, Laura, Nowak, Daniel, Hofmann, Wolf-Karsten, Buergermeister, Rebecca, Kerber, Carolin, Rausch, Tobias, Korbel, Jan O., Luke, Brian, Trumpp, Andreas, Kulozik, Andreas E.
Published 2015

Mapping copy number variation by population scale genome sequencing

by Mills, Ryan E., Walter, Klaudia, Stewart, Chip, Handsaker, Robert E., Chen, Ken, Alkan, Can, Abyzov, Alexej, Yoon, Seungtai Chris, Ye, Kai, Cheetham, R. Keira, Chinwalla, Asif, Conrad, Donald F., Fu, Yutao, Grubert, Fabian, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Iakoucheva, Lilia M., Iqbal, Zamin, Kang, Shuli, Kidd, Jeffrey M., Konkel, Miriam K., Korn, Joshua, Khurana, Ekta, Kura, Deniz, Lam, Hugo Y. K., Leng, Jing, Li, Ruiqiang, Li, Yingrui, Lin, Chang-Yun, Luo, Ruibang, Mu, Xinmeng Jasmine, Nemesh, James, Peckham, Heather E., Rausch, Tobias, Scally, Aylwyn, Shi, Xinghua, Stromberg, Michael P., Stütz, Adrian M., Urban, Alexander Eckehart, Walker, Jerilyn A., Wu, Jiantao, Zhang, Yujun, Zhang, Zhengdong D., Batzer, Mark A., Ding, Li, Marth, Gobor T., McVean, Gil, Sebat, Jonathan, Snyder, Michael, Wang, Jun, Ye, Kenny, Eichler, Evan E., Gerstein, Mark B., Hurles, Matthew E., Lee, Charles, McCarroll, Steven A., Korbel, Jan O.
Published 2011

Genomics and drug profiling of fatal TCF3-HLF-positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options

by Fischer, Ute, Forster, Michael, Rinaldi, Anna, Risch, Thomas, Sungalee, Stéphanie, Warnatz, Hans-Jörg, Bornhauser, Beat, Gombert, Michael, Kratsch, Christina, Stütz, Adrian M., Sultan, Marc, Tchinda, Joelle, Worth, Catherine L., Amstislavskiy, Vyacheslav, Badarinarayan, Nandini, Baruchel, André, Bartram, Thies, Basso, Giuseppe, Canpolat, Cengiz, Cario, Gunnar, Cavé, Hélène, Dakaj, Dardane, Delorenzi, Mauro, Dobay, Maria Pamela, Eckert, Cornelia, Ellinghaus, Eva, Eugster, Sabrina, Frismantas, Viktoras, Ginzel, Sebastian, Haas, Oskar A., Heidenreich, Olaf, Hemmrich-Stanisak, Georg, Hezaveh, Kebria, Höll, Jessica I., Hornhardt, Sabine, Husemann, Peter, Kachroo, Priyadarshini, Kratz, Christian P., te Kronnie, Geertruy, Marovca, Blerim, Niggli, Felix, McHardy, Alice C., Moorman, Anthony V., Panzer-Grümayer, Renate, Petersen, Britt S., Raeder, Benjamin, Ralser, Meryem, Rosenstiel, Philip, Schäfer, Daniel, Schrappe, Martin, Schreiber, Stefan, Schütte, Moritz, Stade, Björn, Thiele, Ralf, von der Weid, Nicolas, Vora, Ajay, Zaliova, Marketa, Zhang, Langhui, Zichner, Thomas, Zimmermann, Martin, Lehrach, Hans, Borkhardt, Arndt, Bourquin, Jean-Pierre, Franke, Andre, Korbel, Jan O., Stanulla, Martin, Yaspo, Marie-Laure
Published 2015

An integrated map of structural variation in 2,504 human genomes

by Sudmant, Peter H., Rausch, Tobias, Gardner, Eugene J., Handsaker, Robert E., Abyzov, Alexej, Huddleston, John, Zhang, Yan, Ye, Kai, Jun, Goo, Fritz, Markus Hsi-Yang, Konkel, Miriam K., Malhotra, Ankit, Stütz, Adrian M., Shi, Xinghua, Casale, Francesco Paolo, Chen, Jieming, Hormozdiari, Fereydoun, Dayama, Gargi, Chen, Ken, Malig, Maika, Chaisson, Mark J.P., Walter, Klaudia, Meiers, Sascha, Kashin, Seva, Garrison, Erik, Auton, Adam, Lam, Hugo Y. K., Mu, Xinmeng Jasmine, Alkan, Can, Antaki, Danny, Bae, Taejeong, Cerveira, Eliza, Chines, Peter, Chong, Zechen, Clarke, Laura, Dal, Elif, Ding, Li, Emery, Sarah, Fan, Xian, Gujral, Madhusudan, Kahveci, Fatma, Kidd, Jeffrey M., Kong, Yu, Lameijer, Eric-Wubbo, McCarthy, Shane, Flicek, Paul, Gibbs, Richard A., Marth, Gabor, Mason, Christopher E., Menelaou, Androniki, Muzny, Donna M., Nelson, Bradley J., Noor, Amina, Parrish, Nicholas F., Pendleton, Matthew, Quitadamo, Andrew, Raeder, Benjamin, Schadt, Eric E., Romanovitch, Mallory, Schlattl, Andreas, Sebra, Robert, Shabalin, Andrey A., Untergasser, Andreas, Walker, Jerilyn A., Wang, Min, Yu, Fuli, Zhang, Chengsheng, Zhang, Jing, Zheng-Bradley, Xiangqun, Zhou, Wanding, Zichner, Thomas, Sebat, Jonathan, Batzer, Mark A., McCarroll, Steven A., Mills, Ryan E., Gerstein, Mark B., Bashir, Ali, Stegle, Oliver, Devine, Scott E., Lee, Charles, Eichler, Evan E., Korbel, Jan O.
Published 2015