Computation of elementary modes: a unifying framework and the new binary approach

by Gagneur, Julien, Klamt, Steffen
Published 2004

Selective Phenotyping, Entropy Reduction, and the Mastermind game

by Gagneur, Julien, Elze, Markus C, Tresch, Achim
Published 2011

Model-based gene set analysis for Bioconductor

by Bauer, Sebastian, Robinson, Peter N., Gagneur, Julien
Published 2011

Modular decomposition of protein-protein interaction networks

by Gagneur, Julien, Krause, Roland, Bouwmeester, Tewis, Casari, Georg
Published 2004

Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle

by Zacher, Benedikt, Lidschreiber, Michael, Cramer, Patrick, Gagneur, Julien, Tresch, Achim
Published 2014

Antisense expression increases gene expression variability and locus interdependency

by Xu, Zhenyu, Wei, Wu, Gagneur, Julien, Clauder-Münster, Sandra, Smolik, Miłosz, Huber, Wolfgang, Steinmetz, Lars M
Published 2011

Temporal Expression Profiling Identifies Pathways Mediating Effect of Causal Variant on Phenotype

by Gupta, Saumya, Radhakrishnan, Aparna, Raharja-Liu, Pandu, Lin, Gen, Steinmetz, Lars M., Gagneur, Julien, Sinha, Himanshu
Published 2015

Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model

by Glas, Julia, Dümcke, Sebastian, Zacher, Benedikt, Poron, Don, Gagneur, Julien, Tresch, Achim
Published 2016

Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle

by Perocchi, Fabiana, Jensen, Lars J, Gagneur, Julien, Ahting, Uwe, von Mering, Christian, Bork, Peer, Prokisch, Holger, Steinmetz, Lars M
Published 2006

Yeast Growth Plasticity Is Regulated by Environment-Specific Multi-QTL Interactions

by Bhatia, Aatish, Yadav, Anupama, Zhu, Chenchen, Gagneur, Julien, Radhakrishnan, Aparna, Steinmetz, Lars M., Bhanot, Gyan, Sinha, Himanshu
Published 2014

Meiotic Interactors of a Mitotic Gene TAO3 Revealed by Functional Analysis of its Rare Variant

by Gupta, Saumya, Radhakrishnan, Aparna, Nitin, Rachana, Raharja-Liu, Pandu, Lin, Gen, Steinmetz, Lars M., Gagneur, Julien, Sinha, Himanshu
Published 2016

Determinants of RNA metabolism in the Schizosaccharomyces pombe genome

by Eser, Philipp, Wachutka, Leonhard, Maier, Kerstin C, Demel, Carina, Boroni, Mariana, Iyer, Srignanakshi, Cramer, Patrick, Gagneur, Julien
Published 2016

Negative feedback buffers effects of regulatory variants

by Bader, Daniel M, Wilkening, Stefan, Lin, Gen, Tekkedil, Manu M, Dietrich, Kim, Steinmetz, Lars M, Gagneur, Julien
Published 2015

Genotype-Environment Interactions Reveal Causal Pathways That Mediate Genetic Effects on Phenotype

by Gagneur, Julien, Stegle, Oliver, Zhu, Chenchen, Jakob, Petra, Tekkedil, Manu M., Aiyar, Raeka S., Schuon, Ann-Kathrin, Pe'er, Dana, Steinmetz, Lars M.
Published 2013

Genotyping 1000 yeast strains by next-generation sequencing

by Wilkening, Stefan, Tekkedil, Manu M, Lin, Gen, Fritsch, Emilie S, Wei, Wu, Gagneur, Julien, Lazinski, David W, Camilli, Andrew, Steinmetz, Lars M
Published 2013

4DXpress: a database for cross-species expression pattern comparisons

by Haudry, Yannick, Berube, Hugo, Letunic, Ivica, Weeber, Paul-Daniel, Gagneur, Julien, Girardot, Charles, Kapushesky, Misha, Arendt, Detlev, Bork, Peer, Brazma, Alvis, Furlong, Eileen E. M., Wittbrodt, Joachim, Henrich, Thorsten
Published 2008

The Genomic and Transcriptomic Landscape of a HeLa Cell Line

by Landry, Jonathan J. M., Pyl, Paul Theodor, Rausch, Tobias, Zichner, Thomas, Tekkedil, Manu M., Stütz, Adrian M., Jauch, Anna, Aiyar, Raeka S., Pau, Gregoire, Delhomme, Nicolas, Gagneur, Julien, Korbel, Jan O., Huber, Wolfgang, Steinmetz, Lars M.
Published 2013

An Evaluation of High-Throughput Approaches to QTL Mapping in Saccharomyces cerevisiae

by Wilkening, Stefan, Lin, Gen, Fritsch, Emilie S., Tekkedil, Manu M., Anders, Simon, Kuehn, Raquel, Nguyen, Michelle, Aiyar, Raeka S., Proctor, Michael, Sakhanenko, Nikita A., Galas, David J., Gagneur, Julien, Deutschbauer, Adam, Steinmetz, Lars M.
Published 2014

Experimental Relocation of the Mitochondrial ATP9 Gene to the Nucleus Reveals Forces Underlying Mitochondrial Genome Evolution

by Bietenhader, Maïlis, Martos, Alexandre, Tetaud, Emmanuel, Aiyar, Raeka S., Sellem, Carole H., Kucharczyk, Roza, Clauder-Münster, Sandra, Giraud, Marie-France, Godard, François, Salin, Bénédicte, Sagot, Isabelle, Gagneur, Julien, Déquard-Chablat, Michelle, Contamine, Véronique, Denmat, Sylvie Hermann-Le, Sainsard-Chanet, Annie, Steinmetz, Lars M., di Rago, Jean-Paul
Published 2012

Mitochondrial protein sorting as a therapeutic target for ATP synthase disorders

by Aiyar, Raeka S., Bohnert, Maria, Duvezin-Caubet, Stéphane, Voisset, Cécile, Gagneur, Julien, Fritsch, Emilie S., Couplan, Elodie, von der Malsburg, Karina, Funaya, Charlotta, Soubigou, Flavie, Courtin, Florence, Suresh, Sundari, Kucharczyk, Roza, Evrard, Justine, Antony, Claude, St.Onge, Robert P., Blondel, Marc, di Rago, Jean-Paul, van der Laan, Martin, Steinmetz, Lars M.
Published 2014