FocalCall: An R Package for the Annotation of Focal Copy Number Aberrations

by Krijgsman, Oscar, Benner, Christian, Meijer, Gerrit A, van de Wiel, Mark A, Ylstra, Bauke
Published 2014

Focal Chromosomal Copy Number Aberrations Identify CMTM8 and GPR177 as New Candidate Driver Genes in Osteosarcoma

by Both, Joeri, Krijgsman, Oscar, Bras, Johannes, Schaap, Gerard R., Baas, Frank, Ylstra, Bauke, Hulsebos, Theo J. M.
Published 2014

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

by van Wieringen, Wessel N, Unger, Kristian, Leday, Gwenaël GR, Krijgsman, Oscar, de Menezes, Renée X, Ylstra, Bauke, van de Wiel, Mark A
Published 2012

Neoadjuvant tamoxifen synchronizes ERα binding and gene expression profiles related to outcome and proliferation

by Severson, Tesa M., Nevedomskaya, Ekaterina, Peeters, Justine, Kuilman, Thomas, Krijgsman, Oscar, van Rossum, Annelot, Droog, Marjolein, Kim, Yongsoo, Koornstra, Rutger, Beumer, Inès, Glas, Annuska M., Peeper, Daniel, Wesseling, Jelle, Simon, Iris M., Wessels, Lodewyk, Linn, Sabine C., Zwart, Wilbert
Published 2016

Intra- and inter-tumor heterogeneity in a vemurafenib-resistant melanoma patient and derived xenografts

by Kemper, Kristel, Krijgsman, Oscar, Cornelissen-Steijger, Paulien, Shahrabi, Aida, Weeber, Fleur, Song, Ji-Ying, Kuilman, Thomas, Vis, Daniel J, Wessels, Lodewyk F, Voest, Emile E, Schumacher, Ton NM, Blank, Christian U, Adams, David J, Haanen, John B, Peeper, Daniel S
Published 2015

CopywriteR: DNA copy number detection from off-target sequence data

by Kuilman, Thomas, Velds, Arno, Kemper, Kristel, Ranzani, Marco, Bombardelli, Lorenzo, Hoogstraat, Marlous, Nevedomskaya, Ekaterina, Xu, Guotai, de Ruiter, Julian, Lolkema, Martijn P, Ylstra, Bauke, Jonkers, Jos, Rottenberg, Sven, Wessels, Lodewyk F, Adams, David J, Peeper, Daniel S, Krijgsman, Oscar
Published 2015

miR-129-3p controls centrosome number in metastatic prostate cancer cells by repressing CP110

by Bijnsdorp, Irene V., Hodzic, Jasmina, Lagerweij, Tonny, Westerman, Bart, Krijgsman, Oscar, Broeke, Jurjen, Verweij, Frederik, Nilsson, R. Jonas A., Rozendaal, Lawrence, van Beusechem, Victor W., van Moorselaar, Jeroen A., Wurdinger, Thomas, Geldof, Albert A.
Published 2016

Genomic aberrations relate early and advanced stage ovarian cancer

by Zaal, Afra, Peyrot, Wouter J., Berns, P. M. J. J., van der Burg, Maria E. L., Veerbeek, Jan H. W., Trimbos, J. Baptist, Cadron, Isabelle, van Diest, Paul J., van Wieringen, Wessel N., Krijgsman, Oscar, Meijer, Gerrit A., Piek, Jurgen M. J., Timmers, Petra J., Vergote, Ignace, Verheijen, René H. M., Ylstra, Bauke, Zweemer, Ronald P.
Published 2012

Immortalization capacity of HPV types is inversely related to chromosomal instability

by Schütze, Denise M., Krijgsman, Oscar, Snijders, Peter J.F., Ylstra, Bauke, Weischenfeldt, Joachim, Mardin, Balca R., Stütz, Adrian M., Korbel, Jan O., de Winter, Johan P., Meijer, Chris J.L.M., Quint, Wim G.V., Bosch, Leontien, Wilting, Saskia M., Steenbergen, Renske D.M.
Published 2016

High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer

by van den Broek, Evert, Dijkstra, Maurits J. J., Krijgsman, Oscar, Sie, Daoud, Haan, Josien C., Traets, Joleen J. H., van de Wiel, Mark A., Nagtegaal, Iris D., Punt, Cornelis J. A., Carvalho, Beatriz, Ylstra, Bauke, Abeln, Sanne, Meijer, Gerrit A., Fijneman, Remond J. A.
Published 2015

BRAFV600E Kinase Domain Duplication Identified in Therapy-Refractory Melanoma Patient-Derived Xenografts

by Kemper, Kristel, Krijgsman, Oscar, Kong, Xiangjun, Cornelissen-Steijger, Paulien, Shahrabi, Aida, Weeber, Fleur, van der Velden, Daphne L., Bleijerveld, Onno B., Kuilman, Thomas, Kluin, Roel J.C., Sun, Chong, Voest, Emile E., Ju, Young Seok, Schumacher, Ton N.M., Altelaar, A.F. Maarten, McDermott, Ultan, Adams, David J., Blank, Christian U., Haanen, John B., Peeper, Daniel S.
Published 2016

Transcription Factor NFIB Is a Driver of Small Cell Lung Cancer Progression in Mice and Marks Metastatic Disease in Patients

by Semenova, Ekaterina A., Kwon, Min-chul, Monkhorst, Kim, Song, Ji-Ying, Bhaskaran, Rajith, Krijgsman, Oscar, Kuilman, Thomas, Peters, Dennis, Buikhuisen, Wieneke A., Smit, Egbert F., Pritchard, Colin, Cozijnsen, Miranda, van der Vliet, Jan, Zevenhoven, John, Lambooij, Jan-Paul, Proost, Natalie, van Montfort, Erwin, Velds, Arno, Huijbers, Ivo J., Berns, Anton
Published 2016