Comparative Genomics

by Hardison, Ross C
Published 2003

Genome-wide Epigenetic Data Facilitate Understanding of Disease Susceptibility Association Studies*

by Hardison, Ross C.
Published 2012

A guide to translation of research results from model organisms to human

by Hardison, Ross C.
Published 2016

dCaP: detecting differential binding events in multiple conditions and proteins

by Chen, Kuan-Bei, Hardison, Ross, Zhang, Yu
Published 2014

SBR-Blood: systems biology repository for hematopoietic cells

by Lichtenberg, Jens, Heuston, Elisabeth F., Mishra, Tejaswini, Keller, Cheryl A., Hardison, Ross C., Bodine, David M.
Published 2016

Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution

by Denas, Olgert, Sandstrom, Richard, Cheng, Yong, Beal, Kathryn, Herrero, Javier, Hardison, Ross C, Taylor, James
Published 2015

Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results

by Elnitski, Laura, Giardine, Belinda, Shah, Prachi, Zhang, Yi, Riemer, Cathy, Weirauch, Matthew, Burhans, Richard, Miller, Webb, Hardison, Ross C.
Published 2005

Conversion events in gene clusters

by Song, Giltae, Hsu, Chih-Hao, Riemer, Cathy, Zhang, Yu, Kim, Hie Lim, Hoffmann, Federico, Zhang, Louxin, Hardison, Ross C, Green, Eric D, Miller, Webb
Published 2011

Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters

by Song, Giltae, Riemer, Cathy, Dickins, Benjamin, Kim, Hie Lim, Zhang, Louxin, Zhang, Yu, Hsu, Chih-Hao, Hardison, Ross C., NISC Comparative Sequencing Program, Green, Eric D., Miller, Webb
Published 2012

Function of GATA Factors in the Adult Mouse Liver

by Zheng, Rena, Rebolledo-Jaramillo, Boris, Zong, Yiwei, Wang, Liqing, Russo, Pierre, Hancock, Wayne, Stanger, Ben Z., Hardison, Ross C., Blobel, Gerd A.
Published 2013

Updates of the HbVar database of human hemoglobin variants and thalassemia mutations

by Giardine, Belinda, Borg, Joseph, Viennas, Emmanouil, Pavlidis, Cristiana, Moradkhani, Kamran, Joly, Philippe, Bartsakoulia, Marina, Riemer, Cathy, Miller, Webb, Tzimas, Giannis, Wajcman, Henri, Hardison, Ross C., Patrinos, George P.
Published 2014

Genome-Wide Organization of GATA1 and TAL1 Determined at High Resolution

by Han, G. Celine, Vinayachandran, Vinesh, Bataille, Alain R., Park, Bongsoo, Chan-Salis, Ka Yim, Keller, Cheryl A., Long, Maria, Mahony, Shaun, Hardison, Ross C., Pugh, B. Franklin
Published 2015

Dynamics of GATA1 binding and expression response in a GATA1-induced erythroid differentiation system

by Jain, Deepti, Mishra, Tejaswini, Giardine, Belinda M., Keller, Cheryl A., Morrissey, Christapher S., Magargee, Susan, Dorman, Christine M., Long, Maria, Weiss, Mitchell J., Hardison, Ross C.
Published 2015

Integrative annotation of chromatin elements from ENCODE data

by Hoffman, Michael M., Ernst, Jason, Wilder, Steven P., Kundaje, Anshul, Harris, Robert S., Libbrecht, Max, Giardine, Belinda, Ellenbogen, Paul M., Bilmes, Jeffrey A., Birney, Ewan, Hardison, Ross C., Dunham, Ian, Kellis, Manolis, Noble, William Stafford
Published 2013

Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility

by Dogan, Nergiz, Wu, Weisheng, Morrissey, Christapher S, Chen, Kuan-Bei, Stonestrom, Aaron, Long, Maria, Keller, Cheryl A, Cheng, Yong, Jain, Deepti, Visel, Axel, Pennacchio, Len A, Weiss, Mitchell J, Blobel, Gerd A, Hardison, Ross C
Published 2015

Topologically-associating domains are stable units of replication-timing regulation

by Pope, Benjamin D., Ryba, Tyrone, Dileep, Vishnu, Yue, Feng, Wu, Weisheng, Denas, Olgert, Vera, Daniel L., Wang, Yanli, Hansen, R. Scott, Canfield, Theresa K., Thurman, Robert E., Cheng, Yong, Gülsoy, Günhan, Dennis, Jonathan H., Snyder, Michael P., Stamatoyannopoulos, John A., Taylor, James, Hardison, Ross C., Kahveci, Tamer, Ren, Bing, Gilbert, David M.
Published 2014

ORegAnno: an open-access community-driven resource for regulatory annotation

by Griffith, Obi L., Montgomery, Stephen B., Bernier, Bridget, Chu, Bryan, Kasaian, Katayoon, Aerts, Stein, Mahony, Shaun, Sleumer, Monica C., Bilenky, Mikhail, Haeussler, Maximilian, Griffith, Malachi, Gallo, Steven M., Giardine, Belinda, Hooghe, Bart, Van Loo, Peter, Blanco, Enrique, Ticoll, Amy, Lithwick, Stuart, Portales-Casamar, Elodie, Donaldson, Ian J., Robertson, Gordon, Wadelius, Claes, De Bleser, Pieter, Vlieghe, Dominique, Halfon, Marc S., Wasserman, Wyeth, Hardison, Ross, Bergman, Casey M., Jones, Steven J.M.
Published 2008

An encyclopedia of mouse DNA elements (Mouse ENCODE)

by Stamatoyannopoulos, John A, Snyder, Michael, Hardison, Ross, Ren, Bing, Gingeras, Thomas, Gilbert, David M, Groudine, Mark, Bender, Michael, Kaul, Rajinder, Canfield, Theresa, Giste, Erica, Johnson, Audra, Zhang, Mia, Balasundaram, Gayathri, Byron, Rachel, Roach, Vaughan, Sabo, Peter J, Sandstrom, Richard, Stehling, A Sandra, Thurman, Robert E, Weissman, Sherman M, Cayting, Philip, Hariharan, Manoj, Lian, Jin, Cheng, Yong, Landt, Stephen G, Ma, Zhihai, Wold, Barbara J, Dekker, Job, Crawford, Gregory E, Keller, Cheryl A, Wu, Weisheng, Morrissey, Christopher, Kumar, Swathi A, Mishra, Tejaswini, Jain, Deepti, Byrska-Bishop, Marta, Blankenberg, Daniel, Lajoie1, Bryan R, Jain, Gaurav, Sanyal, Amartya, Chen, Kaun-Bei, Denas, Olgert, Taylor, James, Blobel, Gerd A, Weiss, Mitchell J, Pimkin, Max, Deng, Wulan, Marinov, Georgi K, Williams, Brian A, Fisher-Aylor, Katherine I, Desalvo, Gilberto, Kiralusha, Anthony, Trout, Diane, Amrhein, Henry, Mortazavi, Ali, Edsall, Lee, McCleary, David, Kuan, Samantha, Shen, Yin, Yue, Feng, Ye, Zhen, Davis, Carrie A, Zaleski, Chris, Jha, Sonali, Xue, Chenghai, Dobin, Alex, Lin, Wei, Fastuca, Meagan, Wang, Huaien, Guigo, Roderic, Djebali, Sarah, Lagarde, Julien, Ryba, Tyrone, Sasaki, Takayo, Malladi, Venkat S, Cline, Melissa S, Kirkup, Vanessa M, Learned, Katrina, Rosenbloom, Kate R, Kent, W James, Feingold, Elise A, Good, Peter J, Pazin, Michael, Lowdon, Rebecca F, Adams, Leslie B
Published 2012

A Comparative Encyclopedia of DNA Elements in the Mouse Genome

by Yue, Feng, Cheng, Yong, Breschi, Alessandra, Vierstra, Jeff, Wu, Weisheng, Ryba, Tyrone, Sandstrom, Richard, Ma, Zhihai, Davis, Carrie, Pope, Benjamin D., Shen, Yin, Pervouchine, Dmitri D., Djebali, Sarah, Thurman, Bob, Kaul, Rajinder, Rynes, Eric, Kirilusha, Anthony, Marinov, Georgi K., Williams, Brian A., Trout, Diane, Amrhein, Henry, Fisher-Aylor, Katherine, Antoshechkin, Igor, DeSalvo, Gilberto, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Zaleski, Chris, Dobin, Alex, Prieto, Pablo, Lagarde, Julien, Bussotti, Giovanni, Tanzer, Andrea, Denas, Olgert, Li, Kanwei, Bender, M. A., Zhang, Miaohua, Byron, Rachel, Groudine, Mark T., McCleary, David, Pham, Long, Ye, Zhen, Kuan, Samantha, Edsall, Lee, Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Keller, Cheryl A., Morrissey, Christapher S., Mishra, Tejaswini, Jain, Deepti, Dogan, Nergiz, Harris, Robert S., Cayting, Philip, Kawli, Trupti, Boyle, Alan P., Euskirchen, Ghia, Kundaje, Anshul, Lin, Shin, Lin, Yiing, Jansen, Camden, Malladi, Venkat S., Cline, Melissa S., Erickson, Drew T., Kirkup, Vanessa M, Learned, Katrina, Sloan, Cricket A., Rosenbloom, Kate R., de Sousa, Beatriz Lacerda, Beal, Kathryn, Pignatelli, Miguel, Flicek, Paul, Lian, Jin, Kahveci, Tamer, Lee, Dongwon, Kent, W. James, Santos, Miguel Ramalho, Herrero, Javier, Notredame, Cedric, Johnson, Audra, Vong, Shinny, Lee, Kristen, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Canfield, Theresa, Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Giste, Erika, Shafer, Anthony, Kutyavin, Tanya, Haugen, Eric, Dunn, Douglas, Reynolds, Alex P., Neph, Shane, Humbert, Richard, Hansen, R. Scott, De Bruijn, Marella, Selleri, Licia, Rudensky, Alexander, Josefowicz, Steven, Samstein, Robert, Eichler, Evan E., Orkin, Stuart H., Levasseur, Dana, Papayannopoulou, Thalia, Chang, Kai-Hsin, Skoultchi, Arthur, Gosh, Srikanta, Disteche, Christine, Treuting, Piper, Wang, Yanli, Weiss, Mitchell J., Blobel, Gerd A., Good, Peter J., Lowdon, Rebecca F., Adams, Leslie B., Zhou, Xiao-Qiao, Pazin, Michael J., Feingold, Elise A., Wold, Barbara, Taylor, James, Kellis, Manolis, Mortazavi, Ali, Weissman, Sherman M., Stamatoyannopoulos, John, Snyder, Michael P., Guigo, Roderic, Gingeras, Thomas R., Gilbert, David M., Hardison, Ross C., Beer, Michael A., Ren, Bing
Published 2014