A proposal for the reference-based annotation of de novo transposable element insertions

by Bergman, Casey M.
Published 2012

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

by Linheiro, Raquel S., Bergman, Casey M.
Published 2012

Photogenic Flies—A review of Chyb and Gompel's Atlas of Drosophila Morphology: Wild-type and Classical Mutants

by Prokop, Andreas, Bergman, Casey M.
Published 2013

Annotating genes and genomes with DNA sequences extracted from biomedical articles

by Haeussler, Maximilian, Gerner, Martin, Bergman, Casey M.
Published 2011

Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae

by Carr, Martin, Bensasson, Douda, Bergman, Casey M.
Published 2012

Strain-specific and pooled genome sequences for populations of Drosophila melanogaster from three continents.

by Bergman, Casey M., Haddrill, Penelope R.
Published 2015

REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila

by Halfon, Marc S., Gallo, Steven M., Bergman, Casey M.
Published 2008

Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome

by Lipatov, Mikhail, Lenkov, Kapa, Petrov, Dmitri A, Bergman, Casey M
Published 2005

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome

by Bergman, Casey M, Quesneville, Hadi, Anxolabéhère, Dominique, Ashburner, Michael
Published 2006

BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events

by Gerner, Martin, Sarafraz, Farzaneh, Bergman, Casey M., Nenadic, Goran
Published 2012

An Age-of-Allele Test of Neutrality for Transposable Element Insertions

by Blumenstiel, Justin P., Chen, Xi, He, Miaomiao, Bergman, Casey M.
Published 2014

Functional Evolution of a cis-Regulatory Module

by Ludwig, Michael Z, Palsson, Arnar, Alekseeva, Elena, Bergman, Casey M, Nathan, Janaki, Kreitman, Martin
Published 2005

Combined Evidence Annotation of Transposable Elements in Genome Sequences

by Quesneville, Hadi, Bergman, Casey M, Andrieu, Olivier, Autard, Delphine, Nouaud, Danielle, Ashburner, Michael, Anxolabehere, Dominique
Published 2005

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster

by Down, Thomas A, Bergman, Casey M, Su, Jing, Hubbard, Tim J. P
Published 2007

pubmed2ensembl: A Resource for Mining the Biological Literature on Genes

by Baran, Joachim, Gerner, Martin, Haeussler, Maximilian, Nenadic, Goran, Bergman, Casey M.
Published 2011

Benchmarking tools for the alignment of functional noncoding DNA

by Pollard, Daniel A, Bergman, Casey M, Stoye, Jens, Celniker, Susan E, Eisen, Michael B
Published 2004

Bringing PLOS Genetics Editors to Preprint Servers

by Barsh, Gregory S., Bergman, Casey M., Brown, Christopher D., Singh, Nadia D., Copenhaver, Gregory P.
Published 2016

Drosophila innate immunity: regional and functional specialization of prophenoloxidases

by Dudzic, Jan P., Kondo, Shu, Ueda, Ryu, Bergman, Casey M., Lemaitre, Bruno
Published 2015

The GNAT library for local and remote gene mention normalization

by Hakenberg, Jörg, Gerner, Martin, Haeussler, Maximilian, Solt, Illés, Plake, Conrad, Schroeder, Michael, Gonzalez, Graciela, Nenadic, Goran, Bergman, Casey M.
Published 2011

Population Genomics of the Wolbachia Endosymbiont in Drosophila melanogaster

by Richardson, Mark F., Weinert, Lucy A., Welch, John J., Linheiro, Raquel S., Magwire, Michael M., Jiggins, Francis M., Bergman, Casey M.
Published 2012