Prediction of a key role of motifs binding E2F and NR2F in down-regulation of numerous genes during the development of the mouse hippocampus

by Dabrowski, Michal, Aerts, Stein, Kaminska, Bozena
Published 2006

Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes

by Aerts, Stein, van Helden, Jacques, Sand, Olivier, Hassan, Bassem A.
Published 2007

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules

by Herrmann, Carl, Van de Sande, Bram, Potier, Delphine, Aerts, Stein
Published 2012

Comprehensive analysis of the base composition around the transcription start site in Metazoa

by Aerts, Stein, Thijs, Gert, Dabrowski, Michal, Moreau, Yves, De Moor, Bart
Published 2004

Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models

by Naval-Sánchez, Marina, Potier, Delphine, Hulselmans, Gert, Christiaens, Valerie, Aerts, Stein
Published 2015

p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response

by Hattori, Hiroyoshi, Janky, Rekin’s, Nietfeld, Wilfried, Aerts, Stein, Madan Babu, M, Venkitaraman, Ashok R
Published 2014

i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly

by Imrichová, Hana, Hulselmans, Gert, Kalender Atak, Zeynep, Potier, Delphine, Aerts, Stein
Published 2015

Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models

by Svetlichnyy, Dmitry, Imrichova, Hana, Fiers, Mark, Kalender Atak, Zeynep, Aerts, Stein
Published 2015

Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling

by Davie, Kristofer, Jacobs, Jelle, Atkins, Mardelle, Potier, Delphine, Christiaens, Valerie, Halder, Georg, Aerts, Stein
Published 2015

Identification of cis-regulatory modules encoding temporal dynamics during development

by Potier, Delphine, Seyres, Denis, Guichard, Céline, Iche-Torres, Magali, Aerts, Stein, Herrmann, Carl, Perrin, Laurent
Published 2014

dachshund Potentiates Hedgehog Signaling during Drosophila Retinogenesis

by Brás-Pereira, Catarina, Potier, Delphine, Jacobs, Jelle, Aerts, Stein, Casares, Fernando, Janody, Florence
Published 2016

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis

by Aerts, Stein, Van Loo, Peter, Thijs, Gert, Mayer, Herbert, de Martin, Rainer, Moreau, Yves, De Moor, Bart
Published 2005

Prognostic relevance of molecular subtypes and master regulators in pancreatic ductal adenocarcinoma

by Janky, Rekin’s, Binda, Maria Mercedes, Allemeersch, Joke, Van den broeck, Anke, Govaere, Olivier, Swinnen, Johannes V., Roskams, Tania, Aerts, Stein, Topal, Baki
Published 2016

Reduced synaptic vesicle protein degradation at lysosomes curbs TBC1D24/sky-induced neurodegeneration

by Fernandes, Ana Clara, Uytterhoeven, Valerie, Kuenen, Sabine, Wang, Yu-Chun, Slabbaert, Jan R., Swerts, Jef, Kasprowicz, Jaroslaw, Aerts, Stein, Verstreken, Patrik
Published 2014

High Accuracy Mutation Detection in Leukemia on a Selected Panel of Cancer Genes

by Kalender Atak, Zeynep, De Keersmaecker, Kim, Gianfelici, Valentina, Geerdens, Ellen, Vandepoel, Roel, Pauwels, Daphnie, Porcu, Michaël, Lahortiga, Idoya, Brys, Vanessa, Dirks, Willy G., Quentmeier, Hilmar, Cloos, Jacqueline, Cuppens, Harry, Uyttebroeck, Anne, Vandenberghe, Peter, Cools, Jan, Aerts, Stein
Published 2012

Alteration of the microRNA network during the progression of Alzheimer's disease

by Lau, Pierre, Bossers, Koen, Janky, Rekin's, Salta, Evgenia, Frigerio, Carlo Sala, Barbash, Shahar, Rothman, Roy, Sierksma, Annerieke S R, Thathiah, Amantha, Greenberg, David, Papadopoulou, Aikaterini S, Achsel, Tilmann, Ayoubi, Torik, Soreq, Hermona, Verhaagen, Joost, Swaab, Dick F, Aerts, Stein, De Strooper, Bart
Published 2013

Comprehensive Analysis of Transcriptome Variation Uncovers Known and Novel Driver Events in T-Cell Acute Lymphoblastic Leukemia

by Kalender Atak, Zeynep, Gianfelici, Valentina, Hulselmans, Gert, De Keersmaecker, Kim, Devasia, Arun George, Geerdens, Ellen, Mentens, Nicole, Chiaretti, Sabina, Durinck, Kaat, Uyttebroeck, Anne, Vandenberghe, Peter, Wlodarska, Iwona, Cloos, Jacqueline, Foà, Robin, Speleman, Frank, Cools, Jan, Aerts, Stein
Published 2013

Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization

by Menoret, Delphine, Santolini, Marc, Fernandes, Isabelle, Spokony, Rebecca, Zanet, Jennifer, Gonzalez, Ignacio, Latapie, Yvan, Ferrer, Pierre, Rouault, Hervé, White, Kevin P, Besse, Philippe, Hakim, Vincent, Aerts, Stein, Payre, Francois, Plaza, Serge
Published 2013

Male-Specific Fruitless Isoforms Target Neurodevelopmental Genes to Specify a Sexually Dimorphic Nervous System

by Neville, Megan C., Nojima, Tetsuya, Ashley, Elizabeth, Parker, Darren J., Walker, John, Southall, Tony, Van de Sande, Bram, Marques, Ana C., Fischer, Bettina, Brand, Andrea H., Russell, Steven, Ritchie, Michael G., Aerts, Stein, Goodwin, Stephen F.
Published 2014

Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells

by Laurette, Patrick, Strub, Thomas, Koludrovic, Dana, Keime, Céline, Le Gras, Stéphanie, Seberg, Hannah, Van Otterloo, Eric, Imrichova, Hana, Siddaway, Robert, Aerts, Stein, Cornell, Robert A, Mengus, Gabrielle, Davidson, Irwin
Published 2015