OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

by Testa, Alison C., Oliver, Richard P., Hane, James K.
Published 2016

A comparative analysis of the heterotrimeric G-protein Gα, Gβ and Gγ subunits in the wheat pathogen Stagonospora nodorum

by Gummer, Joel P A, Trengove, Robert D, Oliver, Richard P, Solomon, Peter S
Published 2012

Resequencing and Comparative Genomics of Stagonospora nodorum: Sectional Gene Absence and Effector Discovery

by Syme, Robert Andrew, Hane, James K., Friesen, Timothy L., Oliver, Richard P.
Published 2013

Dissecting the role of histidine kinase and HOG1 mitogen-activated protein kinase signalling in stress tolerance and pathogenicity of Parastagonospora nodorum on wheat

by John, Evan, Lopez-Ruiz, Francisco, Rybak, Kasia, Mousley, Carl J., Oliver, Richard P., Tan, Kar-Chun
Published 2016

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts

by Testa, Alison C, Hane, James K, Ellwood, Simon R, Oliver, Richard P
Published 2015

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi

by Hane, James K, Rouxel, Thierry, Howlett, Barbara J, Kema, Gert HJ, Goodwin, Stephen B, Oliver, Richard P
Published 2011

Differential effector gene expression underpins epistasis in a plant fungal disease

by Phan, Huyen T.T., Rybak, Kasia, Furuki, Eiko, Breen, Susan, Solomon, Peter S., Oliver, Richard P., Tan, Kar‐Chun
Published 2016

Functional redundancy of necrotrophic effectors – consequences for exploitation for breeding

by Tan, Kar-Chun, Phan, Huyen T. T., Rybak, Kasia, John, Evan, Chooi, Yit H., Solomon, Peter S., Oliver, Richard P.
Published 2015

Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris

by Ellwood, Simon, Phan, Huyen T.T., Jordan, Megan, Hane, James, Torres, Anna M., Avila, Carmen M., Cruz-Izquierdo, Serafin, Oliver, Richard P.
Published 2008

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres

by Ellwood, Simon R, Liu, Zhaohui, Syme, Rob A, Lai, Zhibing, Hane, James K, Keiper, Felicity, Moffat, Caroline S, Oliver, Richard P, Friesen, Timothy L
Published 2010

Demethylase Inhibitor Fungicide Resistance in Pyrenophora teres f. sp. teres Associated with Target Site Modification and Inducible Overexpression of Cyp51

by Mair, Wesley J., Deng, Weiwei, Mullins, Jonathan G. L., West, Samuel, Wang, Penghao, Besharat, Naghmeh, Ellwood, Simon R., Oliver, Richard P., Lopez-Ruiz, Francisco J.
Published 2016

The Cysteine Rich Necrotrophic Effector SnTox1 Produced by Stagonospora nodorum Triggers Susceptibility of Wheat Lines Harboring Snn1

by Liu, Zhaohui, Zhang, Zengcui, Faris, Justin D., Oliver, Richard P., Syme, Robert, McDonald, Megan C., McDonald, Bruce A., Solomon, Peter S., Lu, Shunwen, Shelver, Weilin L., Xu, Steven, Friesen, Timothy L.
Published 2012

Proposal for a unified nomenclature for target‐site mutations associated with resistance to fungicides

by Mair, Wesley, Lopez‐Ruiz, Francisco, Stammler, Gerd, Clark, William, Burnett, Fiona, Hollomon, Derek, Ishii, Hideo, Thind, Tarlochan S, Brown, James KM, Fraaije, Bart, Cools, Hans, Shaw, Michael, Fillinger, Sabine, Walker, Anne-Sophie, Mellado, Emilia, Schnabel, Guido, Mehl, Andreas, Oliver, Richard P
Published 2016

Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-C...

by Cockram, James, Scuderi, Alice, Barber, Toby, Furuki, Eiko, Gardner, Keith A., Gosman, Nick, Kowalczyk, Radoslaw, Phan, Huyen P., Rose, Gemma A., Tan, Kar-Chun, Oliver, Richard P., Mackay, Ian J.
Published 2015

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics

by Syme, Robert A., Tan, Kar-Chun, Hane, James K., Dodhia, Kejal, Stoll, Thomas, Hastie, Marcus, Furuki, Eiko, Ellwood, Simon R., Williams, Angela H., Tan, Yew-Foon, Testa, Alison C., Gorman, Jeffrey J., Oliver, Richard P.
Published 2016

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergen...

by Manning, Viola A., Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J., Goodwin, Stephen B., Berlin, Aaron M., Figueroa, Melania, Freitag, Michael, Hane, James K., Henrissat, Bernard, Holman, Wade H., Kodira, Chinnappa D., Martin, Joel, Oliver, Richard P., Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C., Spatafora, Joseph W., Turgeon, B. Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V., Ma, Li-Jun, Ciuffetti, Lynda M.
Published 2013

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

by Rouxel, Thierry, Graubert, Jonathan, Hane, James K., Hoede, Claire, Van de Wouw, Angela P., Couloux, Arnaud, Dominguez, Victoria, Anthouard, Véronique, Bally, Pascal, Bourras, Salim, Cozijnsen, Anton J., Ciuffetti, Lynda M., Degrave, Alexandre, Dilmaghani, Azita, Duret, Laurent, Fudal, Isabelle, Goodwin, Stephen B., Gout, Lilian, Glaser, Nicolas, Linglin, Juliette, Kema, Gert H. J., Lapalu, Nicolas, Lawrence, Christopher B., May, Kim, Meyer, Michel, Ollivier, Bénédicte, Poulain, Julie, Schoch, Conrad L., Simon, Adeline, Spatafora, Joseph W., Stachowiak, Anna, Turgeon, B. Gillian, Tyler, Brett M., Vincent, Delphine, Weissenbach, Jean, Amselem, Joëlle, Quesneville, Hadi, Oliver, Richard P., Wincker, Patrick, Balesdent, Marie-Hélène, Howlett, Barbara J.
Published 2011

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

by Rouxel, Thierry, Grandaubert, Jonathan, Hane, James K., Hoede, Claire, van de Wouw, Angela P., Couloux, Arnaud, Dominguez, Victoria, Anthouard, Véronique, Bally, Pascal, Bourras, Salim, Cozijnsen, Anton J., Ciuffetti, Lynda M., Degrave, Alexandre, Dilmaghani, Azita, Duret, Laurent, Fudal, Isabelle, Goodwin, Stephen B., Gout, Lilian, Glaser, Nicolas, Linglin, Juliette, Kema, Gert H. J., Lapalu, Nicolas, Lawrence, Christopher B., May, Kim, Meyer, Michel, Ollivier, Bénédicte, Poulain, Julie, Schoch, Conrad L., Simon, Adeline, Spatafora, Joseph W., Stachowiak, Anna, Turgeon, B. Gillian, Tyler, Brett M., Vincent, Delphine, Weissenbach, Jean, Amselem, Joëlle, Quesneville, Hadi, Oliver, Richard P., Wincker, Patrick, Balesdent, Marie-Hélène, Howlett, Barbara J.
Published 2011

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

by Goodwin, Stephen B., M’Barek, Sarrah Ben, Dhillon, Braham, Wittenberg, Alexander H. J., Crane, Charles F., Hane, James K., Foster, Andrew J., Van der Lee, Theo A. J., Grimwood, Jane, Aerts, Andrea, Antoniw, John, Bailey, Andy, Bluhm, Burt, Bowler, Judith, Bristow, Jim, van der Burgt, Ate, Canto-Canche, Blondy, Churchill, Alice C. L., Conde-Ferraez, Laura, Cools, Hans J., Coutinho, Pedro M., Csukai, Michael, Dehal, Paramvir, De Wit, Pierre, Donzelli, Bruno, van de Geest, Henri C., van Ham, Roel C. H. J., Hammond-Kosack, Kim E., Henrissat, Bernard, Kilian, Andrzej, Kobayashi, Adilson K., Koopmann, Edda, Kourmpetis, Yiannis, Kuzniar, Arnold, Lindquist, Erika, Lombard, Vincent, Maliepaard, Chris, Martins, Natalia, Mehrabi, Rahim, Nap, Jan P. H., Ponomarenko, Alisa, Rudd, Jason J., Salamov, Asaf, Schmutz, Jeremy, Schouten, Henk J., Shapiro, Harris, Stergiopoulos, Ioannis, Torriani, Stefano F.F., Tu, Hank, de Vries, Ronald P., Waalwijk, Cees, Ware, Sarah B., Wiebenga, Ad, Zwiers, Lute-Harm, Oliver, Richard P., Grigoriev, Igor V., Kema, Gert. H. J.
Published 2011

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

by Goodwin, Stephen B., Ben M'Barek, Sarrah, Dhillon, Braham, Wittenberg, Alexander H. J., Crane, Charles F., Hane, James K., Foster, Andrew J., Van der Lee, Theo A. J., Grimwood, Jane, Aerts, Andrea, Antoniw, John, Bailey, Andy, Bluhm, Burt, Bowler, Judith, Bristow, Jim, van der Burgt, Ate, Canto-Canché, Blondy, Churchill, Alice C. L., Conde-Ferràez, Laura, Cools, Hans J., Coutinho, Pedro M., Csukai, Michael, Dehal, Paramvir, De Wit, Pierre, Donzelli, Bruno, van de Geest, Henri C., van Ham, Roeland C. H. J., Hammond-Kosack, Kim E., Henrissat, Bernard, Kilian, Andrzej, Kobayashi, Adilson K., Koopmann, Edda, Kourmpetis, Yiannis, Kuzniar, Arnold, Lindquist, Erika, Lombard, Vincent, Maliepaard, Chris, Martins, Natalia, Mehrabi, Rahim, Nap, Jan P. H., Ponomarenko, Alisa, Rudd, Jason J., Salamov, Asaf, Schmutz, Jeremy, Schouten, Henk J., Shapiro, Harris, Stergiopoulos, Ioannis, Torriani, Stefano F. F., Tu, Hank, de Vries, Ronald P., Waalwijk, Cees, Ware, Sarah B., Wiebenga, Ad, Zwiers, Lute-Harm, Oliver, Richard P., Grigoriev, Igor V., Kema, Gert H. J.
Published 2011