Transposable element detection from whole genome sequence data

by Ewing, Adam D.
Published 2015

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes

by Ewing, Adam D, Ballinger, Tracy J, Earl, Dent, Harris, Christopher C, Ding, Li, Wilson, Richard K, Haussler, David
Published 2013

An evolutionary arms race between KRAB zinc finger genes 91/93 and SVA/L1 retrotransposons

by Jacobs, Frank MJ, Greenberg, David, Nguyen, Ngan, Haeussler, Maximilian, Ewing, Adam D, Katzman, Sol, Paten, Benedict, Salama, Sofie R, Haussler, David
Published 2014

Evidence for L1-associated DNA rearrangements and negligible L1 retrotransposition in glioblastoma multiforme

by Carreira, Patricia E., Ewing, Adam D., Li, Guibo, Schauer, Stephanie N., Upton, Kyle R., Fagg, Allister C., Morell, Santiago, Kindlova, Michaela, Gerdes, Patricia, Richardson, Sandra R., Li, Bo, Gerhardt, Daniel J., Wang, Jun, Brennan, Paul M., Faulkner, Geoffrey J.
Published 2016

Ubiquitous L1 Mosaicism in Hippocampal Neurons

by Upton, Kyle R., Gerhardt, Daniel J., Jesuadian, J. Samuel, Richardson, Sandra R., Sánchez-Luque, Francisco J., Bodea, Gabriela O., Ewing, Adam D., Salvador-Palomeque, Carmen, van der Knaap, Marjo S., Brennan, Paul M., Vanderver, Adeline, Faulkner, Geoffrey J.
Published 2015

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

by Ewing, Adam D, Houlahan, Kathleen E, Hu, Yin, Ellrott, Kyle, Caloian, Cristian, Yamaguchi, Takafumi N, Bare, J Christopher, P’ng, Christine, Waggott, Daryl, Sabelnykova, Veronica Y, Kellen, Michael R, Norman, Thea C, Haussler, David, Friend, Stephen H, Stolovitzky, Gustavo, Margolin, Adam A, Stuart, Joshua M, Boutros, Paul C
Published 2015