Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

by Omberg, Larsson, Ellrott, Kyle, Yuan, Yuan, Kandoth, Cyriac, Wong, Chris, Kellen, Michael R, Friend, Stephen H, Stuart, Josh, Liang, Han, Margolin, Adam A
Published 2013

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models

by Karr, Jonathan R., Williams, Alex H., Zucker, Jeremy D., Raue, Andreas, Steiert, Bernhard, Timmer, Jens, Kreutz, Clemens, Wilkinson, Simon, Allgood, Brandon A., Bot, Brian M., Hoff, Bruce R., Kellen, Michael R., Covert, Markus W., Stolovitzky, Gustavo A., Meyer, Pablo
Published 2015

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

by Ewing, Adam D, Houlahan, Kathleen E, Hu, Yin, Ellrott, Kyle, Caloian, Cristian, Yamaguchi, Takafumi N, Bare, J Christopher, P’ng, Christine, Waggott, Daryl, Sabelnykova, Veronica Y, Kellen, Michael R, Norman, Thea C, Haussler, David, Friend, Stephen H, Stolovitzky, Gustavo, Margolin, Adam A, Stuart, Joshua M, Boutros, Paul C
Published 2015