Biomarkers and subtypes of cancer

by Starmans, Maud H.W., Boutros, Paul C.
Published 2015

The parameter sensitivity of random forests

by Huang, Barbara F.F., Boutros, Paul C.
Published 2016

Log::ProgramInfo: A Perl module to collect and log data for bioinformatics pipelines

by Macdonald, John M., Boutros, Paul C.
Published 2016

mRNA Levels in Control Rat Liver Display Strain-Specific, Hereditary, and AHR-Dependent Components

by Boutros, Paul C., Moffat, Ivy D., Okey, Allan B., Pohjanvirta, Raimo
Published 2011

NanoStringNorm: an extensible R package for the pre-processing of NanoString mRNA and miRNA data

by Waggott, Daryl, Chu, Kenneth, Yin, Shaoming, Wouters, Bradly G., Liu, Fei-Fei, Boutros, Paul C.
Published 2012

Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction

by Quon, Gerald, Haider, Syed, Deshwar, Amit G, Cui, Ang, Boutros, Paul C, Morris, Quaid
Published 2013

Identifying gene locus associations with promyelocytic leukemia nuclear bodies using immuno-TRAP

by Ching, Reagan W., Ahmed, Kashif, Boutros, Paul C., Penn, Linda Z., Bazett-Jones, David P.
Published 2013

Genome-wide gene expression profiling of stress response in a spinal cord clip compression injury model

by Chamankhah, Mahmood, Eftekharpour, Eftekhar, Karimi-Abdolrezaee, Soheila, Boutros, Paul C, San-Marina, Serban, Fehlings, Michael G
Published 2013

Ensemble analyses improve signatures of tumour hypoxia and reveal inter-platform differences

by Fox, Natalie S, Starmans, Maud HW, Haider, Syed, Lambin, Philippe, Boutros, Paul C
Published 2014

Male and female mice show significant differences in hepatic transcriptomic response to 2,3,7,8-tetrachlorodibenzo-p-dioxin

by Lee, Jamie, Prokopec, Stephenie D., Watson, John D., Sun, Ren X., Pohjanvirta, Raimo, Boutros, Paul C.
Published 2015

BAMQL: a query language for extracting reads from BAM files

by Masella, Andre P., Lalansingh, Christopher M., Sivasundaram, Pragash, Fraser, Michael, Bristow, Robert G., Boutros, Paul C.
Published 2016

A bedr way of genomic interval processing

by Haider, Syed, Waggott, Daryl, Lalonde, Emilie, Fung, Clement, Liu, Fei-Fei, Boutros, Paul C.
Published 2016

Identification of Reference Proteins for Western Blot Analyses in Mouse Model Systems of 2,3,7,8-Tetrachlorodibenzo-P-Dioxin (TCDD) Toxicity

by Prokopec, Stephenie D., Watson, John D., Pohjanvirta, Raimo, Boutros, Paul C.
Published 2014

The transcriptomic profile of ovarian cancer grading

by Yao, Cindy Q, Nguyen, Francis, Haider, Syed, Starmans, Maud H W, Lambin, Philippe, Boutros, Paul C
Published 2015

Toward better benchmarking: challenge-based methods assessment in cancer genomics

by Boutros, Paul C, Margolin, Adam A, Stuart, Joshua M, Califano, Andrea, Stolovitzky, Gustavo
Published 2014

VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams

by Lam, Felix, Lalansingh, Christopher M., Babaran, Holly E., Wang, Zhiyuan, Prokopec, Stephenie D., Fox, Natalie S., Boutros, Paul C.
Published 2016

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles

by Anghel, Catalina V, Quon, Gerald, Haider, Syed, Nguyen, Francis, Deshwar, Amit G, Morris, Quaid D, Boutros, Paul C
Published 2015

Exploiting high-throughput cell line drug screening studies to identify candidate therapeutic agents in head and neck cancer

by Nichols, Anthony C, Black, Morgan, Yoo, John, Pinto, Nicole, Fernandes, Andrew, Haibe-Kains, Benjamin, Boutros, Paul C, Barrett, John W
Published 2014

Exploiting the noise: improving biomarkers with ensembles of data analysis methodologies

by Starmans, Maud HW, Pintilie, Melania, John, Thomas, Der, Sandy D, Shepherd, Frances A, Jurisica, Igor, Lambin, Philippe, Tsao, Ming-Sound, Boutros, Paul C
Published 2012

Two phases of disulfide bond formation have differing requirements for oxygen

by Koritzinsky, Marianne, Levitin, Fiana, van den Beucken, Twan, Rumantir, Ryan A., Harding, Nicholas J., Chu, Kenneth C., Boutros, Paul C., Braakman, Ineke, Wouters, Bradly G.
Published 2013