Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data

by Jeffery, Ian B, Higgins, Desmond G, Culhane, Aedín C
Published 2006

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

by Culhane, Aedín C, Perrière, Guy, Higgins, Desmond G
Published 2003

A multivariate approach to the integration of multi-omics datasets

by Meng, Chen, Kuster, Bernhard, Culhane, Aedín C, Gholami, Amin Moghaddas
Published 2014

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data

by Baty, Florent, Bihl, Michel P, Perrière, Guy, Culhane, Aedín C, Brutsche, Martin H
Published 2005

iBBiG: iterative binary bi-clustering of gene sets

by Gusenleitner, Daniel, Howe, Eleanor A., Bentink, Stefan, Quackenbush, John, Culhane, Aedín C.
Published 2012

Dimension reduction techniques for the integrative analysis of multi-omics data

by Meng, Chen, Zeleznik, Oana A., Thallinger, Gerhard G., Kuster, Bernhard, Gholami, Amin M., Culhane, Aedín C.
Published 2016

Stem Cell-Like Gene Expression in Ovarian Cancer Predicts Type II Subtype and Prognosis

by Schwede, Matthew, Spentzos, Dimitrios, Bentink, Stefan, Hofmann, Oliver, Haibe-Kains, Benjamin, Harrington, David, Quackenbush, John, Culhane, Aedín C.
Published 2013

Significance Analysis of Prognostic Signatures

by Beck, Andrew H., Knoblauch, Nicholas W., Hefti, Marco M., Kaplan, Jennifer, Schnitt, Stuart J., Culhane, Aedin C., Schroeder, Markus S., Risch, Thomas, Quackenbush, John, Haibe-Kains, Benjamin
Published 2013

RelA-Induced Interferon Response Negatively Regulates Proliferation

by Kochupurakkal, Bose S., Wang, Zhigang C., Hua, Tony, Culhane, Aedin C., Rodig, Scott J., Rajkovic-Molek, Koraljka, Lazaro, Jean-Bernard, Richardson, Andrea L., Biswas, Debajit K., Iglehart, J. Dirk
Published 2015

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

by Culhane, Aedín C., Schröder, Markus S., Sultana, Razvan, Picard, Shaita C., Martinelli, Enzo N., Kelly, Caroline, Haibe-Kains, Benjamin, Kapushesky, Misha, St Pierre, Anne-Alyssa, Flahive, William, Picard, Kermshlise C., Gusenleitner, Daniel, Papenhausen, Gerald, O'Connor, Niall, Correll, Mick, Quackenbush, John
Published 2012

Public data and open source tools for multi-assay genomic investigation of disease

by Kannan, Lavanya, Ramos, Marcel, Re, Angela, El-Hachem, Nehme, Safikhani, Zhaleh, Gendoo, Deena M.A., Davis, Sean, Gomez-Cabrero, David, Castelo, Robert, Hansen, Kasper D., Carey, Vincent J., Morgan, Martin, Culhane, Aedín C., Haibe-Kains, Benjamin, Waldron, Levi
Published 2016

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons

by Ho Sui, Shannan J., Begley, Kimberly, Reilly, Dorothy, Chapman, Brad, McGovern, Ray, Rocca-Sera, Philippe, Maguire, Eamonn, Altschuler, Gabriel M., Hansen, Terah A. A., Sompallae, Ramakrishna, Krivtsov, Andrei, Shivdasani, Ramesh A., Armstrong, Scott A., Culhane, Aedín C., Correll, Mick, Sansone, Susanna-Assunta, Hofmann, Oliver, Hide, Winston
Published 2012