Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks

by Haibe-Kains, Benjamin, Olsen, Catharina, Djebbari, Amira, Bontempi, Gianluca, Correll, Mick, Bouton, Christopher, Quackenbush, John
Published 2012

Brain and Testicular Tumors in Mice with Progenitor Cells Lacking BAX and BAK

by Katz, Samuel G., Fisher, Jill K., Correll, Mick, Bronson, Roderick T., Ligon, Keith L., Walensky, Loren D.
Published 2012

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

by Culhane, Aedín C., Schröder, Markus S., Sultana, Razvan, Picard, Shaita C., Martinelli, Enzo N., Kelly, Caroline, Haibe-Kains, Benjamin, Kapushesky, Misha, St Pierre, Anne-Alyssa, Flahive, William, Picard, Kermshlise C., Gusenleitner, Daniel, Papenhausen, Gerald, O'Connor, Niall, Correll, Mick, Quackenbush, John
Published 2012

A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study

by Fountzilas, Elena, Kelly, Andrew D, Perez-Atayde, Antonio R, Goldsmith, Jeffrey, Konstantinopoulos, Panagiotis A, Francoeur, Nancy, Correll, Mick, Rubio, Renee, Hu, Lan, Gebhardt, Mark C, Quackenbush, John, Spentzos, Dimitrios
Published 2012

Live Attenuated Rev-Independent Nef¯SIV Enhances Acquisition of Heterologous SIVsmE660 in Acutely Vaccinated Rhesus Macaques

by Byrareddy, Siddappa N., Ayash-Rashkovsky, Mila, Kramer, Victor G., Lee, Sandra J., Correll, Mick, Novembre, Francis J., Villinger, Francois, Johnson, Welkin E., von Gegerfelt, Agneta, Felber, Barbara K., Ruprecht, Ruth M.
Published 2013

Moving beyond gene expression: identification of lung-disease-associated novel transcripts and alternative splicing by RNA sequencing

by Brothers, John, Kusko, Rebecca, Liu, Gang, Luo, Lingqi, Guardela, Brenda Juan, Tedrow, John, Alekesyev, Yuriy, Yang, Ivana V, Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Frank, Sebastiani, Paola, Lenburg, Marc, Kaminski, Naftali, Schwartz, David A, Spira, Avrum, Beane, Jennifer
Published 2012

Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq

by Kusko, Rebecca L, Brothers, John, Liu, Gang, Luo, Lingqi, Guardela, Brenda Juan, Tedrow, John, Aleksyev, Yuriy, Yang, Ivana V, Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Frank, Lenburg, Marc, Schwartz, David A, Beane, Jennifer, Kaminski, Naftali, Spira, Avrum
Published 2012

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons

by Ho Sui, Shannan J., Begley, Kimberly, Reilly, Dorothy, Chapman, Brad, McGovern, Ray, Rocca-Sera, Philippe, Maguire, Eamonn, Altschuler, Gabriel M., Hansen, Terah A. A., Sompallae, Ramakrishna, Krivtsov, Andrei, Shivdasani, Ramesh A., Armstrong, Scott A., Culhane, Aedín C., Correll, Mick, Sansone, Susanna-Assunta, Hofmann, Oliver, Hide, Winston
Published 2012

Characterizing the small RNA transcriptome associated with COPD and ILD using next-generation sequencing

by Campbell, Joshua D, Luo, Lingqi, Liu, Gang, Xiao, Ji, Gerrein, Joseph, Guardela, Brenda J, Tedrow, John, Aleksyev, Yuriy O, Yang, Ivana V, Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Frank, Schwartz, David A, Kaminski, Naftali, Lenburg, Marc E, Beane, Jennifer, Spira, Avrum
Published 2012

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

by Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Published 2012