Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators

by Padi, Megha, Quackenbush, John
Published 2015

Integration of TP53, DREAM, MMB-FOXM1 and RB-E2F target gene analyses identifies cell cycle gene regulatory networks

by Fischer, Martin, Grossmann, Patrick, Padi, Megha, DeCaprio, James A.
Published 2016

The CHR promoter element controls cell cycle-dependent gene transcription and binds the DREAM and MMB complexes

by Müller, Gerd A., Quaas, Marianne, Schümann, Michael, Krause, Eberhard, Padi, Megha, Fischer, Martin, Litovchick, Larisa, DeCaprio, James A., Engeland, Kurt
Published 2012

Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation

by Berrios, Christian, Padi, Megha, Keibler, Mark A., Park, Donglim Esther, Molla, Vadim, Cheng, Jingwei, Lee, Soo Mi, Stephanopoulos, Gregory, Quackenbush, John, DeCaprio, James A.
Published 2016

Identification of FAM111A as an SV40 Host Range Restriction and Adenovirus Helper Factor

by Fine, Debrah A., Rozenblatt-Rosen, Orit, Padi, Megha, Korkhin, Anna, James, Robert L., Adelmant, Guillaume, Yoon, Rosa, Guo, Luxuan, Berrios, Christian, Zhang, Ying, Calderwood, Michael A., Velmurgan, Soundarapandian, Cheng, Jingwei, Marto, Jarrod A., Hill, David E., Cusick, Michael E., Vidal, Marc, Florens, Laurence, Washburn, Michael P., Litovchick, Larisa, DeCaprio, James A.
Published 2012

Viral Perturbations of Host Networks Reflect Disease Etiology

by Gulbahce, Natali, Yan, Han, Dricot, Amélie, Padi, Megha, Byrdsong, Danielle, Franchi, Rachel, Lee, Deok-Sun, Rozenblatt-Rosen, Orit, Mar, Jessica C., Calderwood, Michael A., Baldwin, Amy, Zhao, Bo, Santhanam, Balaji, Braun, Pascal, Simonis, Nicolas, Huh, Kyung-Won, Hellner, Karin, Grace, Miranda, Chen, Alyce, Rubio, Renee, Marto, Jarrod A., Christakis, Nicholas A., Kieff, Elliott, Roth, Frederick P., Roecklein-Canfield, Jennifer, DeCaprio, James A., Cusick, Michael E., Quackenbush, John, Hill, David E., Münger, Karl, Vidal, Marc, Barabási, Albert-László
Published 2012

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

by Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Published 2012