Inferring steady state single-cell gene expression distributions from analysis of mesoscopic samples

by Mar, Jessica C, Rubio, Renee, Quackenbush, John
Published 2006

Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation

by Mar, Jessica C, Harlow, Timothy J, Ragan, Mark A
Published 2005

Defining an informativeness metric for clustering gene expression data

by Mar, Jessica C., Wells, Christine A., Quackenbush, John
Published 2011

attract: A Method for Identifying Core Pathways That Define Cellular Phenotypes

by Mar, Jessica C., Matigian, Nicholas A., Quackenbush, John, Wells, Christine A.
Published 2011

Single-Cell Gene Expression Profiles Define Self-Renewing, Pluripotent, and Lineage Primed States of Human Pluripotent Stem Cells

by Hough, Shelley R., Thornton, Matthew, Mason, Elizabeth, Mar, Jessica C., Wells, Christine A., Pera, Martin F.
Published 2014

Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development

by Hasegawa, Yu, Taylor, Deanne, Ovchinnikov, Dmitry A., Wolvetang, Ernst J., de Torrenté, Laurence, Mar, Jessica C.
Published 2015

Gene Expression Variability as a Unifying Element of the Pluripotency Network

by Mason, Elizabeth A., Mar, Jessica C., Laslett, Andrew L., Pera, Martin F., Quackenbush, John, Wolvetang, Ernst, Wells, Christine A.
Published 2014

The meta-epigenomic structure of purified human stem cell populations is defined at cis-regulatory sequences

by Wijetunga, N. Ari, Delahaye, Fabien, Zhao, Yong Mei, Golden, Aaron, Mar, Jessica C., Einstein, Francine H., Greally, John M.
Published 2014

Variance of Gene Expression Identifies Altered Network Constraints in Neurological Disease

by Mar, Jessica C., Matigian, Nicholas A., Mackay-Sim, Alan, Mellick, George D., Sue, Carolyn M., Silburn, Peter A., McGrath, John J., Quackenbush, John, Wells, Christine A.
Published 2011

Temporal dynamics and transcriptional control using single-cell gene expression analysis

by Kouno, Tsukasa, de Hoon, Michiel, Mar, Jessica C, Tomaru, Yasuhiro, Kawano, Mitsuoki, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Shin, Jay W
Published 2013

Arteriolar niches maintain haematopoietic stem cell quiescence

by Kunisaki, Yuya, Bruns, Ingmar, Scheiermann, Christoph, Ahmed, Jalal, Pinho, Sandra, Zhang, Dachuan, Mizoguchi, Toshihide, Wei, Qiaozhi, Lucas, Daniel, Ito, Keisuke, Mar, Jessica C., Bergman, Aviv, Frenette, Paul S.
Published 2013

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

by Carbajo, Daniel, Magi, Shigeyuki, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Arner, Erik, Forrest, Alistair R. R., Carninci, Piero, Hayashizaki, Yoshihide, Daub, Carsten O., Okada-Hatakeyama, Mariko, Mar, Jessica C.
Published 2015

Viral Perturbations of Host Networks Reflect Disease Etiology

by Gulbahce, Natali, Yan, Han, Dricot, Amélie, Padi, Megha, Byrdsong, Danielle, Franchi, Rachel, Lee, Deok-Sun, Rozenblatt-Rosen, Orit, Mar, Jessica C., Calderwood, Michael A., Baldwin, Amy, Zhao, Bo, Santhanam, Balaji, Braun, Pascal, Simonis, Nicolas, Huh, Kyung-Won, Hellner, Karin, Grace, Miranda, Chen, Alyce, Rubio, Renee, Marto, Jarrod A., Christakis, Nicholas A., Kieff, Elliott, Roth, Frederick P., Roecklein-Canfield, Jennifer, DeCaprio, James A., Cusick, Michael E., Quackenbush, John, Hill, David E., Münger, Karl, Vidal, Marc, Barabási, Albert-László
Published 2012

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

by Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Published 2012