A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription

by Babak, Tomas, Blencowe, Benjamin J, Hughes, Timothy R
Published 2005

Considerations in the identification of functional RNA structural elements in genomic alignments

by Babak, Tomas, Blencowe, Benjamin J, Hughes, Timothy R
Published 2007

Response to “The Reality of Pervasive Transcription”

by van Bakel, Harm, Nislow, Corey, Blencowe, Benjamin J., Hughes, Timothy R.
Published 2011

Sequence evidence for common ancestry of eukaryotic endomembrane coatomers

by Promponas, Vasilis J., Katsani, Katerina R., Blencowe, Benjamin J., Ouzounis, Christos A.
Published 2016

An extensive program of periodic alternative splicing linked to cell cycle progression

by Dominguez, Daniel, Tsai, Yi-Hsuan, Weatheritt, Robert, Wang, Yang, Blencowe, Benjamin J, Wang, Zefeng
Published 2016

Transcriptional Profiling of Endocrine Cerebro-Osteodysplasia Using Microarray and Next-Generation Sequencing

by Lahiry, Piya, Lee, Leo J., Frey, Brendan J., Rupar, C. Anthony, Siu, Victoria M., Blencowe, Benjamin J., Hegele, Robert A.
Published 2011

Functional Genomics Evidence Unearths New Moonlighting Roles of Outer Ring Coat Nucleoporins

by Katsani, Katerina R., Irimia, Manuel, Karapiperis, Christos, Scouras, Zacharias G., Blencowe, Benjamin J., Promponas, Vasilis J., Ouzounis, Christos A.
Published 2014

The transcriptional and splicing landscape of intestinal organoids undergoing nutrient starvation or endoplasmic reticulum stress

by Tsalikis, Jessica, Pan, Qun, Tattoli, Ivan, Maisonneuve, Charles, Blencowe, Benjamin J., Philpott, Dana J., Girardin, Stephen E.
Published 2016

The Acute Myeloid Leukemia-Associated Protein, Dek, Forms a Splicing-Dependent Interaction with Exon-Product Complexes

by McGarvey, Tim, Rosonina, Emanuel, McCracken, Susan, Li, Qiyu, Arnaout, Ramy, Mientjes, Edwin, Nickerson, Jeffrey A., Awrey, Don, Greenblatt, Jack, Grosveld, Gerard, Blencowe, Benjamin J.
Published 2000

Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing

by Colak, Recep, Kim, TaeHyung, Michaut, Magali, Sun, Mark, Irimia, Manuel, Bellay, Jeremy, Myers, Chad L., Blencowe, Benjamin J., Kim, Philip M.
Published 2013

Regulated aggregative multicellularity in a close unicellular relative of metazoa

by Sebé-Pedrós, Arnau, Irimia, Manuel, del Campo, Javier, Parra-Acero, Helena, Russ, Carsten, Nusbaum, Chad, Blencowe, Benjamin J, Ruiz-Trillo, Iñaki
Published 2013

Transcriptomic Analysis of Autistic Brain Reveals Convergent Molecular Pathology

by Voineagu, Irina, Wang, Xinchen, Johnston, Patrick, Lowe, Jennifer K., Tian, Yuan, Horvath, Steve, Mill, Jonathan, Cantor, Rita, Blencowe, Benjamin J., Geschwind, Daniel H.
Published 2011

Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians

by Solana, Jordi, Irimia, Manuel, Ayoub, Salah, Orejuela, Marta Rodriguez, Zywitza, Vera, Jens, Marvin, Tapial, Javier, Ray, Debashish, Morris, Quaid, Hughes, Timothy R, Blencowe, Benjamin J, Rajewsky, Nikolaus
Published 2016

Gomafu lncRNA knockout mice exhibit mild hyperactivity with enhanced responsiveness to the psychostimulant methamphetamine

by Ip, Joanna Y., Sone, Masamitsu, Nashiki, Chieko, Pan, Qun, Kitaichi, Kiyoyuki, Yanaka, Kaori, Abe, Takaya, Takao, Keizo, Miyakawa, Tsuyoshi, Blencowe, Benjamin J., Nakagawa, Shinichi
Published 2016

A germline mutation in SRRM2, a splicing factor gene, is implicated in papillary thyroid carcinoma predisposition

by Tomsic, Jerneja, He, Huiling, Akagi, Keiko, Liyanarachchi, Sandya, Pan, Qun, Bertani, Blake, Nagy, Rebecca, Symer, David E., Blencowe, Benjamin J., Chapelle, Albert de la
Published 2015

Latent Regulatory Potential of Human-Specific Repetitive Elements

by Ward, Michelle C., Wilson, Michael D., Barbosa-Morais, Nuno L., Schmidt, Dominic, Stark, Rory, Pan, Qun, Schwalie, Petra C., Menon, Suraj, Lukk, Margus, Watt, Stephen, Thybert, David, Kutter, Claudia, Kirschner, Kristina, Flicek, Paul, Blencowe, Benjamin J., Odom, Duncan T.
Published 2013

The functional landscape of mouse gene expression

by Zhang, Wen, Morris, Quaid D, Chang, Richard, Shai, Ofer, Bakowski, Malina A, Mitsakakis, Nicholas, Mohammad, Naveed, Robinson, Mark D, Zirngibl, Ralph, Somogyi, Eszter, Laurin, Nancy, Eftekharpour, Eftekhar, Sat, Eric, Grigull, Jörg, Pan, Qun, Peng, Wen-Tao, Krogan, Nevan, Greenblatt, Jack, Fehlings, Michael, van der Kooy, Derek, Aubin, Jane, Bruneau, Benoit G, Rossant, Janet, Blencowe, Benjamin J, Frey, Brendan J, Hughes, Timothy R
Published 2004

5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary

by Khare, Tarang, Pai, Shraddha, Koncevicius, Karolis, Pal, Mrinal, Kriukiene, Edita, Liutkeviciute, Zita, Irimia, Manuel, Jia, Peixin, Ptak, Carolyn, Xia, Menghang, Tice, Raymond, Tochigi, Mamoru, Moréra, Solange, Nazarians, Anaies, Belsham, Denise, Wong, Albert H. C., Blencowe, Benjamin J., Wang, Sun Chong, Kapranov, Philipp, Kustra, Rafal, Labrie, Viviane, Klimasauskas, Saulius, Petronis, Arturas
Published 2012

Compound heterozygous mutations in the noncoding RNU4ATAC cause Roifman Syndrome by disrupting minor intron splicing

by Merico, Daniele, Roifman, Maian, Braunschweig, Ulrich, Yuen, Ryan K. C., Alexandrova, Roumiana, Bates, Andrea, Reid, Brenda, Nalpathamkalam, Thomas, Wang, Zhuozhi, Thiruvahindrapuram, Bhooma, Gray, Paul, Kakakios, Alyson, Peake, Jane, Hogarth, Stephanie, Manson, David, Buncic, Raymond, Pereira, Sergio L., Herbrick, Jo-Anne, Blencowe, Benjamin J., Roifman, Chaim M., Scherer, Stephen W.
Published 2015

The alternative splicing factor Nova2 regulates vascular development and lumen formation

by Giampietro, Costanza, Deflorian, Gianluca, Gallo, Stefania, Di Matteo, Anna, Pradella, Davide, Bonomi, Serena, Belloni, Elisa, Nyqvist, Daniel, Quaranta, Valeria, Confalonieri, Stefano, Bertalot, Giovanni, Orsenigo, Fabrizio, Pisati, Federica, Ferrero, Elisabetta, Biamonti, Giuseppe, Fredrickx, Evelien, Taveggia, Carla, Wyatt, Chris D. R., Irimia, Manuel, Di Fiore, Pier Paolo, Blencowe, Benjamin J., Dejana, Elisabetta, Ghigna, Claudia
Published 2015