DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomics

by Nowicka, Malgorzata, Robinson, Mark D.
Published 2016

Do count-based differential expression methods perform poorly when genes are expressed in only one condition?

by Zhou, Xiaobei, Robinson, Mark D.
Published 2015

Computational epigenomics: challenges and opportunities

by Robinson, Mark D., Pelizzola, Mattia
Published 2015

A comparison of Affymetrix gene expression arrays

by Robinson, Mark D, Speed, Terence P
Published 2007

Robustly detecting differential expression in RNA sequencing data using observation weights

by Zhou, Xiaobei, Lindsay, Helen, Robinson, Mark D.
Published 2014

Genomics by the beach

by Hickey, Peter F, Robinson, Mark D
Published 2014

FunSpec: a web-based cluster interpreter for yeast

by Robinson, Mark D, Grigull, Jörg, Mohammad, Naveed, Hughes, Timothy R
Published 2002

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences

by Soneson, Charlotte, Love, Michael I., Robinson, Mark D.
Published 2016

Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens

by Cai, Haoyang, Kumar, Nitin, Bagheri, Homayoun C, von Mering, Christian, Robinson, Mark D, Baudis, Michael
Published 2014

Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage

by Soneson, Charlotte, Matthes, Katarina L., Nowicka, Malgorzata, Law, Charity W., Robinson, Mark D.
Published 2016

DUSP4 deficiency caused by promoter hypermethylation drives JNK signaling and tumor cell survival in diffuse large B cell lymphoma

by Schmid, Corina A., Robinson, Mark D., Scheifinger, Nicole A., Müller, Sebastian, Cogliatti, Sergio, Tzankov, Alexandar, Müller, Anne
Published 2015

Statistical methods for detecting differentially methylated loci and regions

by Robinson, Mark D., Kahraman, Abdullah, Law, Charity W., Lindsay, Helen, Nowicka, Malgorzata, Weber, Lukas M., Zhou, Xiaobei
Published 2014

Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows

by Siebert, Stefan, Robinson, Mark D., Tintori, Sophia C., Goetz, Freya, Helm, Rebecca R., Smith, Stephen A., Shaner, Nathan, Haddock, Steven H. D., Dunn, Casey W.
Published 2011

A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments

by Robinson, Mark D, De Souza, David P, Keen, Woon Wai, Saunders, Eleanor C, McConville, Malcolm J, Speed, Terence P, Likić, Vladimir A
Published 2007

Savant Genome Browser 2: visualization and analysis for population-scale genomics

by Fiume, Marc, Smith, Eric J. M., Brook, Andrew, Strbenac, Dario, Turner, Brian, Mezlini, Aziz M., Robinson, Mark D., Wodak, Shoshana J., Brudno, Michael
Published 2012

BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach

by Riebler, Andrea, Menigatti, Mirco, Song, Jenny Z, Statham, Aaron L, Stirzaker, Clare, Mahmud, Nadiya, Mein, Charles A, Clark, Susan J, Robinson, Mark D
Published 2014

Are Epigenetic Factors Implicated in Chronic Widespread Pain?

by Burri, Andrea, Marinova, Zoya, Robinson, Mark D., Kühnel, Brigitte, Waldenberger, Melanie, Wahl, Simone, Kunze, Sonja, Gieger, Christian, Livshits, Gregory, Williams, Frances
Published 2016

Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis

by Locke, Warwick J, Zotenko, Elena, Stirzaker, Clare, Robinson, Mark D, Hinshelwood, Rebecca A, Stone, Andrew, Reddel, Roger R, Huschtscha, Lily I, Clark, Susan J
Published 2015

High-dimensional single-cell analysis reveals the immune signature of narcolepsy

by Hartmann, Felix J., Bernard-Valnet, Raphaël, Quériault, Clémence, Mrdjen, Dunja, Weber, Lukas M., Galli, Edoardo, Krieg, Carsten, Robinson, Mark D., Nguyen, Xuan-Hung, Dauvilliers, Yves, Liblau, Roland S., Becher, Burkhard
Published 2016

Reconstructing an Ancestral Mammalian Immune Supercomplex from a Marsupial Major Histocompatibility Complex

by Belov, Katherine, Deakin, Janine E, Papenfuss, Anthony T, Baker, Michelle L, Melman, Sandra D, Siddle, Hannah V, Gouin, Nicolas, Goode, David L, Sargeant, Tobias J, Robinson, Mark D, Wakefield, Matthew J, Mahony, Shaun, Cross, Joseph G. R, Benos, Panayiotis V, Samollow, Paul B, Speed, Terence P, Graves, Jennifer A. Marshall, Miller, Robert D
Published 2006