Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
Long-range interactions between regulatory elements and gene promoters play key roles in transcriptional regulation. The vast majority of interactions are uncharted, constituting a major missing link in understanding genome control. Here, we use promoter capture Hi-C to identify interacting regions...
Main Authors: | Javierre, Biola M., Burren, Oliver S., Wilder, Steven P., Kreuzhuber, Roman, Hill, Steven M., Sewitz, Sven, Cairns, Jonathan, Wingett, Steven W., Várnai, Csilla, Thiecke, Michiel J., Burden, Frances, Farrow, Samantha, Cutler, Antony J., Rehnström, Karola, Downes, Kate, Grassi, Luigi, Kostadima, Myrto, Freire-Pritchett, Paula, Wang, Fan, Stunnenberg, Hendrik G., Todd, John A., Zerbino, Daniel R., Stegle, Oliver, Ouwehand, Willem H., Frontini, Mattia, Wallace, Chris, Spivakov, Mikhail, Fraser, Peter |
---|---|
Format: | Online |
Language: | English |
Published: |
Cell Press
2016
|
Online Access: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123897/ |
Similar Items
-
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
by: Cairns, Jonathan, et al.
Published: (2016) -
Comparison of Hi-C results using in-solution versus in-nucleus ligation
by: Nagano, Takashi, et al.
Published: (2015) -
Chromosome contacts in activated T cells identify autoimmune disease candidate genes
by: Oliver S. Burren, et al.
Published: (2017-09-01) -
Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity
by: Pancaldi, Vera, et al.
Published: (2016) -
CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets
by: Schofield, E. C., et al.
Published: (2016)