FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data

FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data

We have developed FusionSeq to identify fusion transcripts from paired-end RNA-sequencing. FusionSeq includes filters to remove spurious candidate fusions with artifacts, such as misalignment or random pairing of transcript fragments, and it ranks candidates according to several statistics. It also...

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Bibliographic Details
Main Authors: Sboner, Andrea, Habegger, Lukas, Pflueger, Dorothee, Terry, Stephane, Chen, David Z, Rozowsky, Joel S, Tewari, Ashutosh K, Kitabayashi, Naoki, Moss, Benjamin J, Chee, Mark S, Demichelis, Francesca, Rubin, Mark A, Gerstein, Mark B
Format: Online
Language:English
Published: BioMed Central 2010
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218660/

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