Mis-Assembled “Segmental Duplications” in Two Versions of the Bos taurus Genome

by Zimin, Aleksey V., Kelley, David R., Roberts, Michael, Marçais, Guillaume, Salzberg, Steven L., Yorke, James A.
Published 2012

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation

by Wegrzyn, Jill L., Liechty, John D., Stevens, Kristian A., Wu, Le-Shin, Loopstra, Carol A., Vasquez-Gross, Hans A., Dougherty, William M., Lin, Brian Y., Zieve, Jacob J., Martínez-García, Pedro J., Holt, Carson, Yandell, Mark, Zimin, Aleksey V., Yorke, James A., Crepeau, Marc W., Puiu, Daniela, Salzberg, Steven L., de Jong, Pieter J., Mockaitis, Keithanne, Main, Doreen, Langley, Charles H., Neale, David B.
Published 2014

A new rhesus macaque assembly and annotation for next-generation sequencing analyses

by Zimin, Aleksey V, Cornish, Adam S, Maudhoo, Mnirnal D, Gibbs, Robert M, Zhang, Xiongfei, Pandey, Sanjit, Meehan, Daniel T, Wipfler, Kristin, Bosinger, Steven E, Johnson, Zachary P, Tharp, Gregory K, Marçais, Guillaume, Roberts, Michael, Ferguson, Betsy, Fox, Howard S, Treangen, Todd, Salzberg, Steven L, Yorke, James A, Norgren,, Robert B
Published 2014

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination

by Li, Gang, Hillier, LaDeana W., Grahn, Robert A., Zimin, Aleksey V., David, Victor A., Menotti-Raymond, Marilyn, Middleton, Rondo, Hannah, Steven, Hendrickson, Sher, Makunin, Alex, O’Brien, Stephen J., Minx, Pat, Wilson, Richard K., Lyons, Leslie A., Warren, Wesley C., Murphy, William J.
Published 2016

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

by Neale, David B, Wegrzyn, Jill L, Stevens, Kristian A, Zimin, Aleksey V, Puiu, Daniela, Crepeau, Marc W, Cardeno, Charis, Koriabine, Maxim, Holtz-Morris, Ann E, Liechty, John D, Martínez-García, Pedro J, Vasquez-Gross, Hans A, Lin, Brian Y, Zieve, Jacob J, Dougherty, William M, Fuentes-Soriano, Sara, Wu, Le-Shin, Gilbert, Don, Marçais, Guillaume, Roberts, Michael, Holt, Carson, Yandell, Mark, Davis, John M, Smith, Katherine E, Dean, Jeffrey FD, Lorenz, W Walter, Whetten, Ross W, Sederoff, Ronald, Wheeler, Nicholas, McGuire, Patrick E, Main, Doreen, Loopstra, Carol A, Mockaitis, Keithanne, deJong, Pieter J, Yorke, James A, Salzberg, Steven L, Langley, Charles H
Published 2014

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

by Dasmahapatra, Kanchon K, Walters, James R., Briscoe, Adriana D., Davey, John W., Whibley, Annabel, Nadeau, Nicola J., Zimin, Aleksey V., Hughes, Daniel S. T., Ferguson, Laura C., Martin, Simon H., Salazar, Camilo, Lewis, James J., Adler, Sebastian, Ahn, Seung-Joon, Baker, Dean A., Baxter, Simon W., Chamberlain, Nicola L., Chauhan, Ritika, Counterman, Brian A., Dalmay, Tamas, Gilbert, Lawrence E., Gordon, Karl, Heckel, David G., Hines, Heather M., Hoff, Katharina J., Holland, Peter W.H., Jacquin-Joly, Emmanuelle, Jiggins, Francis M., Jones, Robert T., Kapan, Durrell D., Kersey, Paul, Lamas, Gerardo, Lawson, Daniel, Mapleson, Daniel, Maroja, Luana S., Martin, Arnaud, Moxon, Simon, Palmer, William J., Papa, Riccardo, Papanicolaou, Alexie, Pauchet, Yannick, Ray, David A., Rosser, Neil, Salzberg, Steven L., Supple, Megan A., Surridge, Alison, Tenger-Trolander, Ayse, Vogel, Heiko, Wilkinson, Paul A., Wilson, Derek, Yorke, James A., Yuan, Furong, Balmuth, Alexi L., Eland, Cathlene, Gharbi, Karim, Thomson, Marian, Gibbs, Richard A., Han, Yi, Jayaseelan, Joy C., Kovar, Christie, Mathew, Tittu, Muzny, Donna M., Ongeri, Fiona, Pu, Ling-Ling, Qu, Jiaxin, Thornton, Rebecca L., Worley, Kim C., Wu, Yuan-Qing, Linares, Mauricio, Blaxter, Mark L., Constant, Richard H. ffrench, Joron, Mathieu, Kronforst, Marcus R., Mullen, Sean P., Reed, Robert D., Scherer, Steven E., Richards, Stephen, Mallet, James, McMillan, W. Owen, Jiggins, Chris D.
Published 2012