MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

by Holt, Carson, Yandell, Mark
Published 2011

Elucidation of the molecular envenomation strategy of the cone snail Conus geographus through transcriptome sequencing of its venom duct

by Hu, Hao, Bandyopadhyay, Pradip K, Olivera, Baldomero M, Yandell, Mark
Published 2012

Antimicrobial Functions of Lactoferrin Promote Genetic Conflicts in Ancient Primates and Modern Humans

by Barber, Matthew F., Kronenberg, Zev, Yandell, Mark, Elde, Nels C.
Published 2016

The Sequence Ontology: a tool for the unification of genome annotations

by Eilbeck, Karen, Lewis, Suzanna E, Mungall, Christopher J, Yandell, Mark, Stein, Lincoln, Durbin, Richard, Ashburner, Michael
Published 2005

VAAST 2.0: Improved Variant Classification and Disease-Gene Identification Using a Conservation-Controlled Amino Acid Substitution Matrix

by Hu, Hao, Huff, Chad D, Moore, Barry, Flygare, Steven, Reese, Martin G, Yandell, Mark
Published 2013

In Vivo Determination of Direct Targets of the Nonsense-Mediated Decay Pathway in Drosophila

by Chapin, Alex, Hu, Hao, Rynearson, Shawn G., Hollien, Julie, Yandell, Mark, Metzstein, Mark M.
Published 2014

VARPRISM: incorporating variant prioritization in tests of de novo mutation association

by Hu, Hao, Coon, Hilary, Li, Man, Yandell, Mark, Huff, Chad D.
Published 2016

Transiently Active Wnt/β-Catenin Signaling Is Not Required but Must Be Silenced for Stem Cell Function during Muscle Regeneration

by Murphy, Malea M., Keefe, Alexandra C., Lawson, Jennifer A., Flygare, Steven D., Yandell, Mark, Kardon, Gabrielle
Published 2014

The draft genome sequence and annotation of the desert woodrat Neotoma lepida

by Campbell, Michael, Oakeson, Kelly F., Yandell, Mark, Halpert, James R., Dearing, Denise
Published 2016

Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes

by Yandell, Mark, Mungall, Chris J, Smith, Chris, Prochnik, Simon, Kaminker, Joshua, Hartzell, George, Lewis, Suzanna, Rubin, Gerald M
Published 2006

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

by Kapusta, Aurélie, Kronenberg, Zev, Lynch, Vincent J., Zhuo, Xiaoyu, Ramsay, LeeAnn, Bourque, Guillaume, Yandell, Mark, Feschotte, Cédric
Published 2013

Coordinated control of senescence by lncRNA and a novel T-box3 co-repressor complex

by Kumar P, Pavan, Emechebe, Uchenna, Smith, Richard, Franklin, Sarah, Moore, Barry, Yandell, Mark, Lessnick, Stephen L, Moon, Anne M
Published 2014

TBX3 Regulates Splicing In Vivo: A Novel Molecular Mechanism for Ulnar-Mammary Syndrome

by Kumar P., Pavan, Franklin, Sarah, Emechebe, Uchenna, Hu, Hao, Moore, Barry, Lehman, Chris, Yandell, Mark, Moon, Anne M.
Published 2014

Venom Insulins of Cone Snails Diversify Rapidly and Track Prey Taxa

by Safavi-Hemami, Helena, Lu, Aiping, Li, Qing, Fedosov, Alexander E., Biggs, Jason, Showers Corneli, Patrice, Seger, Jon, Yandell, Mark, Olivera, Baldomero M.
Published 2016

Wham: Identifying Structural Variants of Biological Consequence

by Kronenberg, Zev N., Osborne, Edward J., Cone, Kelsey R., Kennedy, Brett J., Domyan, Eric T., Shapiro, Michael D., Elde, Nels C., Yandell, Mark
Published 2015

Muscle stem cells contribute to myofibers in sedentary adult mice

by Keefe, Alexandra C., Lawson, Jennifer A., Flygare, Steven D., Fox, Zachary D., Colasanto, Mary P., Mathew, Sam J., Yandell, Mark, Kardon, Gabrielle
Published 2015

DisAp-dependent striated fiber elongation is required to organize ciliary arrays

by Galati, Domenico F., Bonney, Stephanie, Kronenberg, Zev, Clarissa, Christina, Yandell, Mark, Elde, Nels C., Jerka-Dziadosz, Maria, Giddings, Thomas H., Frankel, Joseph, Pearson, Chad G.
Published 2014

Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species

by Domyan, Eric T, Kronenberg, Zev, Infante, Carlos R, Vickrey, Anna I, Stringham, Sydney A, Bruders, Rebecca, Guernsey, Michael W, Park, Sungdae, Payne, Jason, Beckstead, Robert B, Kardon, Gabrielle, Menke, Douglas B, Yandell, Mark, Shapiro, Michael D
Published 2016

Shared Segment Analysis and Next-Generation Sequencing Implicates the Retinoic Acid Signaling Pathway in Total Anomalous Pulmonary Venous Return (TAPVR)

by Nash, Dustin, Arrington, Cammon B., Kennedy, Brett J., Yandell, Mark, Wu, Wilfred, Zhang, Wenying, Ware, Stephanie, Jorde, Lynn B., Gruber, Peter J., Yost, H. Joseph, Bowles, Neil E., Bleyl, Steven B.
Published 2015

An improved genome release (version Mt4.0) for the model legume Medicago truncatula

by Tang, Haibao, Krishnakumar, Vivek, Bidwell, Shelby, Rosen, Benjamin, Chan, Agnes, Zhou, Shiguo, Gentzbittel, Laurent, Childs, Kevin L, Yandell, Mark, Gundlach, Heidrun, Mayer, Klaus FX, Schwartz, David C, Town, Christopher D
Published 2014