Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups

by Wu, Dongying, Jospin, Guillaume, Eisen, Jonathan A.
Published 2013

Clinical Efficacy of Mudpack Therapy in Treating Knee Osteoarthritis: A Meta-Analysis of Randomized Controlled Studies

by Xiang, Jie, Wu, Dongying, Li, Jian’an
Published 2016

Ginsenoside Rb1 prevents interleukin-1 beta induced inflammation and apoptosis in human articular chondrocytes

by Cheng, Wendan, Wu, Dongying, Zuo, Qiang, Wang, Zhen, Fan, Weimin
Published 2013

Thoracic Pedicle Screw Placement Guide Plate Produced by Three-Dimensional (3-D) Laser Printing

by Chen, Hongliang, Guo, Kaijing, Yang, Huilin, Wu, Dongying, Yuan, Feng
Published 2016

Clinical Use of 3D Printing Guide Plate in Posterior Lumbar Pedicle Screw Fixation

by Chen, Hongliang, Wu, Dongying, Yang, Huilin, Guo, Kaijin
Published 2015

Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource

by Sharpton, Thomas J, Jospin, Guillaume, Wu, Dongying, Langille, Morgan GI, Pollard, Katherine S, Eisen, Jonathan A
Published 2012

Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees

by Wu, Dongying, Wu, Martin, Halpern, Aaron, Rusch, Douglas B., Yooseph, Shibu, Frazier, Marvin, Venter, J. Craig, Eisen, Jonathan A.
Published 2011

HLA-A Gene Polymorphism Defined by High-Resolution Sequence-Based Typing in 161 Northern Chinese Han People

by Yan, Chunxia, Wang, Ruilin, Li, Jingxiang, Deng, Yajun, Wu, Dongying, Zhang, Hongbo, Zhang, Hongxing, Wang, Lidong, Zhang, Chunrong, Sun, Haiyan, Zhang, Xiuqing, Wang, Jian, Yang, Huanming, Li, Shengbin
Published 2003

Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response

by Becker, Erin A., Seitzer, Phillip M., Tritt, Andrew, Larsen, David, Krusor, Megan, Yao, Andrew I., Wu, Dongying, Madern, Dominique, Eisen, Jonathan A., Darling, Aaron E., Facciotti, Marc T.
Published 2014

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

by Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D
Published 2005

Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters

by Wu, Dongying, Daugherty, Sean C, Van Aken, Susan E, Pai, Grace H, Watkins, Kisha L, Khouri, Hoda, Tallon, Luke J, Zaborsky, Jennifer M, Dunbar, Helen E, Tran, Phat L, Moran, Nancy A, Eisen, Jonathan A
Published 2006

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

by Castelle, Cindy J., Hug, Laura A., Wrighton, Kelly C., Thomas, Brian C., Williams, Kenneth H., Wu, Dongying, Tringe, Susannah G., Singer, Steven W., Eisen, Jonathan A., Banfield, Jillian F.
Published 2013

The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis

by Dmytrenko, Oleg, Russell, Shelbi L, Loo, Wesley T, Fontanez, Kristina M, Liao, Li, Roeselers, Guus, Sharma, Raghav, Stewart, Frank J, Newton, Irene LG, Woyke, Tanja, Wu, Dongying, Lang, Jenna Morgan, Eisen, Jonathan A, Cavanaugh, Colleen M
Published 2014

Fosmid library end sequencing reveals a rarely known genome structure of marine shrimp Penaeus monodon

by Huang, Shiao-Wei, Lin, You-Yu, You, En-Min, Liu, Tze-Tze, Shu, Hung-Yu, Wu, Keh-Ming, Tsai, Shih-Feng, Lo, Chu-Fang, Kou, Guang-Hsiung, Ma, Gwo-Chin, Chen, Ming, Wu, Dongying, Aoki, Takashi, Hirono, Ikuo, Yu, Hon-Tsen
Published 2011

Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry

by Heins, Richard A., Cheng, Xiaoliang, Nath, Sangeeta, Deng, Kai, Bowen, Benjamin P., Chivian, Dylan C., Datta, Supratim, Friedland, Gregory D., D’Haeseleer, Patrik, Wu, Dongying, Tran-Gyamfi, Mary, Scullin, Chessa S., Singh, Seema, Shi, Weibing, Hamilton, Matthew G., Bendall, Matthew L., Sczyrba, Alexander, Thompson, John, Feldman, Taya, Guenther, Joel M., Gladden, John M., Cheng, Jan-Fang, Adams, Paul D., Rubin, Edward M., Simmons, Blake A., Sale, Kenneth L., Northen, Trent R., Deutsch, Samuel
Published 2014

The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

by Rusch, Douglas B, Halpern, Aaron L, Sutton, Granger, Heidelberg, Karla B, Williamson, Shannon, Yooseph, Shibu, Wu, Dongying, Eisen, Jonathan A, Hoffman, Jeff M, Remington, Karin, Beeson, Karen, Tran, Bao, Smith, Hamilton, Baden-Tillson, Holly, Stewart, Clare, Thorpe, Joyce, Freeman, Jason, Andrews-Pfannkoch, Cynthia, Venter, Joseph E, Li, Kelvin, Kravitz, Saul, Heidelberg, John F, Utterback, Terry, Rogers, Yu-Hui, Falcón, Luisa I, Souza, Valeria, Bonilla-Rosso, Germán, Eguiarte, Luis E, Karl, David M, Sathyendranath, Shubha, Platt, Trevor, Bermingham, Eldredge, Gallardo, Victor, Tamayo-Castillo, Giselle, Ferrari, Michael R, Strausberg, Robert L, Nealson, Kenneth, Friedman, Robert, Frazier, Marvin, Venter, J. Craig
Published 2007

Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote

by Eisen, Jonathan A, Coyne, Robert S, Wu, Martin, Wu, Dongying, Thiagarajan, Mathangi, Wortman, Jennifer R, Badger, Jonathan H, Ren, Qinghu, Amedeo, Paolo, Jones, Kristie M, Tallon, Luke J, Delcher, Arthur L, Salzberg, Steven L, Silva, Joana C, Haas, Brian J, Majoros, William H, Farzad, Maryam, Carlton, Jane M, Smith, Roger K, Garg, Jyoti, Pearlman, Ronald E, Karrer, Kathleen M, Sun, Lei, Manning, Gerard, Elde, Nels C, Turkewitz, Aaron P, Asai, David J, Wilkes, David E, Wang, Yufeng, Cai, Hong, Collins, Kathleen, Stewart, B. Andrew, Lee, Suzanne R, Wilamowska, Katarzyna, Weinberg, Zasha, Ruzzo, Walter L, Wloga, Dorota, Gaertig, Jacek, Frankel, Joseph, Tsao, Che-Chia, Gorovsky, Martin A, Keeling, Patrick J, Waller, Ross F, Patron, Nicola J, Cherry, J. Michael, Stover, Nicholas A, Krieger, Cynthia J, del Toro, Christina, Ryder, Hilary F, Williamson, Sondra C, Barbeau, Rebecca A, Hamilton, Eileen P, Orias, Eduardo
Published 2006