Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report

by Chan, Esther T., Cherry, J. Michael
Published 2012

The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database

by Engel, Stacia R., Cherry, J. Michael
Published 2013

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations

by Park, Julie, Costanzo, Maria C., Balakrishnan, Rama, Cherry, J. Michael, Hong, Eurie L.
Published 2012

Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study

by Costanzo, Maria C., Park, Julie, Balakrishnan, Rama, Cherry, J. Michael, Hong, Eurie L.
Published 2011

A guide to best practices for Gene Ontology (GO) manual annotation

by Balakrishnan, Rama, Harris, Midori A., Huntley, Rachael, Van Auken, Kimberly, Cherry, J. Michael
Published 2013

The YeastGenome app: the Saccharomyces Genome Database at your fingertips

by Wong, Edith D., Karra, Kalpana, Hitz, Benjamin C., Hong, Eurie L., Cherry, J. Michael
Published 2013

From one to many: expanding the Saccharomyces cerevisiae reference genome panel

by Engel, Stacia R., Weng, Shuai, Binkley, Gail, Paskov, Kelley, Song, Giltae, Cherry, J. Michael
Published 2016

AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae

by Song, Giltae, Dickins, Benjamin J. A., Demeter, Janos, Engel, Stacia, Dunn, Barbara, Cherry, J. Michael
Published 2015

In the beginning there was babble…

by Klionsky, Daniel J., Bruford, Elspeth A., Cherry, J. Michael, Hodgkin, Jonathan, Laulederkind, Stanley J.F., Singer, Amy G.
Published 2012

Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research

by Stover, Nicholas A., Krieger, Cynthia J., Binkley, Gail, Dong, Qing, Fisk, Dianna G., Nash, Robert, Sethuraman, Anand, Weng, Shuai, Cherry, J. Michael
Published 2006

PatMatch: a program for finding patterns in peptide and nucleotide sequences

by Yan, Thomas, Yoo, Danny, Berardini, Tanya Z., Mueller, Lukas A., Weems, Dan C., Weng, Shuai, Cherry, J. Michael, Rhee, Seung Y.
Published 2005

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration

by Gaudet, Pascale, Munoz-Torres, Monica, Robinson-Rechavi, Marc, Attwood, Teresa, Bateman, Alex, Cherry, J. Michael, Kania, Renate, O'Donovan, Claire, Yamasaki, Chisato
Published 2013

Correction: AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae

by Song, Giltae, Dickins, Benjamin J. A., Demeter, Janos, Engel, Stacia, Gallagher, Jennifer, Choe, Kisurb, Dunn, Barbara, Snyder, Michael, Cherry, J. Michael
Published 2015

Toward an interactive article: integrating journals and biological databases

by Rangarajan, Arun, Schedl, Tim, Yook, Karen, Chan, Juancarlos, Haenel, Stephen, Otis, Lolly, Faelten, Sharon, DePellegrin-Connelly, Tracey, Isaacson, Ruth, Skrzypek, Marek S, Marygold, Steven J, Stefancsik , Raymund, Cherry, J Michael, Sternberg, Paul W, Müller, Hans-Michael
Published 2011

Saccharomyces genome database provides new regulation data

by Costanzo, Maria C., Engel, Stacia R., Wong, Edith D., Lloyd, Paul, Karra, Kalpana, Chan, Esther T., Weng, Shuai, Paskov, Kelley M., Roe, Greg R., Binkley, Gail, Hitz, Benjamin C., Cherry, J. Michael
Published 2014

Gene Ontology annotations at SGD: new data sources and annotation methods

by Hong, Eurie L., Balakrishnan, Rama, Dong, Qing, Christie, Karen R., Park, Julie, Binkley, Gail, Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Krieger, Cynthia J., Livstone, Michael S., Miyasato, Stuart R., Nash, Robert S., Oughtred, Rose, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Zhu, Kathy K., Dolinski, Kara, Botstein, David, Cherry, J. Michael
Published 2008

Saccharomyces Genome Database: the genomics resource of budding yeast

by Cherry, J. Michael, Hong, Eurie L., Amundsen, Craig, Balakrishnan, Rama, Binkley, Gail, Chan, Esther T., Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Karra, Kalpana, Krieger, Cynthia J., Miyasato, Stuart R., Nash, Rob S., Park, Julie, Skrzypek, Marek S., Simison, Matt, Weng, Shuai, Wong, Edith D.
Published 2012

Expanded protein information at SGD: new pages and proteome browser

by Nash, Robert, Weng, Shuai, Hitz, Ben, Balakrishnan, Rama, Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hong, Eurie L., Livstone, Michael S., Oughtred, Rose, Park, Julie, Skrzypek, Marek, Theesfeld, Chandra L., Binkley, Gail, Dong, Qing, Lane, Christopher, Miyasato, Stuart, Sethuraman, Anand, Schroeder, Mark, Dolinski, Kara, Botstein, David, Cherry, J. Michael
Published 2007

Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)

by Balakrishnan, Rama, Christie, Karen R., Costanzo, Maria C., Dolinski, Kara, Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hong, Eurie L., Nash, Robert, Oughtred, Rose, Skrzypek, Marek, Theesfeld, Chandra L., Binkley, Gail, Dong, Qing, Lane, Christopher, Sethuraman, Anand, Weng, Shuai, Botstein, David, Cherry, J. Michael
Published 2005

CORRIGENDUM: InterMOD: integrated data and tools for the unification of model organism research

by Sullivan, Julie, Karra, Kalpana, Moxon, Sierra A. T., Vallejos, Andrew, Motenko, Howie, Wong, J. D., Aleksic, Jelena, Balakrishnan, Rama, Binkley, Gail, Harris, Todd, Hitz, Benjamin, Jayaraman, Pushkala, Lyne, Rachel, Neuhauser, Steven, Pich, Christian, Smith, Richard N., Trinh, Quang, Cherry, J. Michael, Richardson, Joel, Stein, Lincoln, Twigger, Simon, Westerfield, Monte, Worthey, Elizabeth, Micklem, Gos
Published 2013