Metabolic PathFinding: inferring relevant pathways in biochemical networks

by Croes, Didier, Couche, Fabian, Wodak, Shoshana J., van Helden, Jacques
Published 2005

Relating destabilizing regions to known functional sites in proteins

by Dessailly, Benoît H, Lensink, Marc F, Wodak, Shoshana J
Published 2007

Recognizing protein–protein interfaces with empirical potentials and reduced amino acid alphabets

by Launay, Guillaume, Mendez, Raul, Wodak, Shoshana, Simonson, Thomas
Published 2007

LigASite—a database of biologically relevant binding sites in proteins with known apo-structures

by Dessailly, Benoit H., Lensink, Marc F., Orengo, Christine A., Wodak, Shoshana J.
Published 2008

Transcriptional regulation of protein complexes in yeast

by Simonis, Nicolas, van Helden, Jacques, Cohen, George N, Wodak, Shoshana J
Published 2004

Topic Pages: PLoS Computational Biology Meets Wikipedia

by Wodak, Shoshana J., Mietchen, Daniel, Collings, Andrew M., Russell, Robert B., Bourne, Philip E.
Published 2012

OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms

by Hao, Yanqi, Merkoulovitch, Anna, Vlasblom, James, Pu, Shuye, Turinsky, Andrei L., Roudeva, Denitza, Turner, Brian, Greenblatt, Jack, Wodak, Shoshana J.
Published 2011

Savant Genome Browser 2: visualization and analysis for population-scale genomics

by Fiume, Marc, Smith, Eric J. M., Brook, Andrew, Strbenac, Dario, Turner, Brian, Mezlini, Aziz M., Robinson, Mark D., Wodak, Shoshana J., Brudno, Michael
Published 2012

Phenotypic Switching Induced by Damaged Matrix Is Associated with DNA Methyltransferase 3A (DNMT3A) Activity and Nuclear Localization in Smooth Muscle Cells (SMC)

by Jiang, Jia-Xin, Aitken, Karen J., Sotiropolous, Chris, Kirwan, Tyler, Panchal, Trupti, Zhang, Nicole, Pu, Shuye, Wodak, Shoshana, Tolg, Cornelia, Bägli, Darius J.
Published 2013

Correction: Phenotypic Switching Induced by Damaged Matrix Is Associated with DNA Methyltransferase 3A (DNMT3A) Activity and Nuclear Localization in Smooth Muscle Cells (SMC)

by Jiang, Jia-Xin, Aitken, Karen J., Sotiropoulos, Chris, Kirwan, Tyler, Panchal, Trupti, Zhang, Nicole, Pu, Shuye, Wodak, Shoshana, Tolg, Cornelia, Bägli, Darius J.
Published 2013

Intercellular network structure and regulatory motifs in the human hematopoietic system

by Qiao, Wenlian, Wang, Weijia, Laurenti, Elisa, Turinsky, Andrei L, Wodak, Shoshana J, Bader, Gary D, Dick, John E, Zandstra, Peter W
Published 2014

Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways

by Babu, Mohan, Díaz-Mejía, J. Javier, Vlasblom, James, Gagarinova, Alla, Phanse, Sadhna, Graham, Chris, Yousif, Fouad, Ding, Huiming, Xiong, Xuejian, Nazarians-Armavil, Anaies, Alamgir, Md, Ali, Mehrab, Pogoutse, Oxana, Pe'er, Asaf, Arnold, Roland, Michaut, Magali, Parkinson, John, Golshani, Ashkan, Whitfield, Chris, Wodak, Shoshana J., Moreno-Hagelsieb, Gabriel, Greenblatt, Jack F., Emili, Andrew
Published 2011

Multilocus loss of DNA methylation in individuals with mutations in the histone H3 Lysine 4 Demethylase KDM5C

by Grafodatskaya, Daria, Chung, Barian HY, Butcher, Darci T, Turinsky, Andrei L, Goodman, Sarah J, Choufani, Sana, Chen, Yi-An, Lou, Youliang, Zhao, Chunhua, Rajendram, Rageen, Abidi, Fatima E, Skinner, Cindy, Stavropoulos, James, Bondy, Carolyn A, Hamilton, Jill, Wodak, Shoshana, Scherer, Stephen W, Schwartz, Charles E, Weksberg, Rosanna
Published 2013

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

by Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Published 2016