The Protein Data Bank in Europe (PDBe): bringing structure to biology

by Velankar, Sameer, Kleywegt, Gerard J.
Published 2011

Implementing an X-ray validation pipeline for the Protein Data Bank

by Gore, Swanand, Velankar, Sameer, Kleywegt, Gerard J.
Published 2012

The role of structural bioinformatics resources in the era of integrative structural biology

by Gutmanas, Aleksandras, Oldfield, Thomas J., Patwardhan, Ardan, Sen, Sanchayita, Velankar, Sameer, Kleywegt, Gerard J.
Published 2013

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

by Velankar, Sameer, Dana, José M., Jacobsen, Julius, van Ginkel, Glen, Gane, Paul J., Luo, Jie, Oldfield, Thomas J., O’Donovan, Claire, Martin, Maria-Jesus, Kleywegt, Gerard J.
Published 2013

UniChem: a unified chemical structure cross-referencing and identifier tracking system

by Chambers, Jon, Davies, Mark, Gaulton, Anna, Hersey, Anne, Velankar, Sameer, Petryszak, Robert, Hastings, Janna, Bellis, Louisa, McGlinchey, Shaun, Overington, John P
Published 2013

Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features

by Speranzini, Valentina, Rotili, Dante, Ciossani, Giuseppe, Pilotto, Simona, Marrocco, Biagina, Forgione, Mariantonietta, Lucidi, Alessia, Forneris, Federico, Mehdipour, Parinaz, Velankar, Sameer, Mai, Antonello, Mattevi, Andrea
Published 2016

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources

by Bousfield, David, McEntyre, Johanna, Velankar, Sameer, Papadatos, George, Bateman, Alex, Cochrane, Guy, Kim, Jee-Hyub, Graef, Florian, Vartak, Vid, Alako, Blaise, Blomberg, Niklas
Published 2016

Remediation of the protein data bank archive

by Henrick, Kim, Feng, Zukang, Bluhm, Wolfgang F., Dimitropoulos, Dimitris, Doreleijers, Jurgen F., Dutta, Shuchismita, Flippen-Anderson, Judith L., Ionides, John, Kamada, Chisa, Krissinel, Eugene, Lawson, Catherine L., Markley, John L., Nakamura, Haruki, Newman, Richard, Shimizu, Yukiko, Swaminathan, Jawahar, Velankar, Sameer, Ory, Jeramia, Ulrich, Eldon L., Vranken, Wim, Westbrook, John, Yamashita, Reiko, Yang, Huanwang, Young, Jasmine, Yousufuddin, Muhammed, Berman, Helen M.
Published 2008

The EBI enzyme portal

by Alcántara, Rafael, Onwubiko, Joseph, Cao, Hong, de Matos, Paula, Cham, Jennifer A., Jacobsen, Jules, Holliday, Gemma L., Fischer, Julia D., Rahman, Syed Asad, Jassal, Bijay, Goujon, Mikael, Rowland, Francis, Velankar, Sameer, López, Rodrigo, Overington, John P., Kleywegt, Gerard J., Hermjakob, Henning, O’Donovan, Claire, Martín, María Jesús, Thornton, Janet M., Steinbeck, Christoph
Published 2013

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

by Lewis, Tony E., Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L., Buchan, Daniel W.A., Chothia, Cyrus, Cuff, Alison, Dana, Jose M., Filippis, Ioannis, Gough, Julian, Hunter, Sarah, Jones, David T., Kelley, Lawrence A., Kleywegt, Gerard J., Minneci, Federico, Mitchell, Alex, Murzin, Alexey G., Ochoa-Montaño, Bernardo, Rackham, Owen J. L., Smith, James, Sternberg, Michael J. E., Velankar, Sameer, Yeats, Corin, Orengo, Christine
Published 2013

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

by Gutmanas, Aleksandras, Adams, Paul D, Bardiaux, Benjamin, Berman, Helen M, Case, David A, Fogh, Rasmus H, Güntert, Peter, Hendrickx, Pieter M S, Herrmann, Torsten, Kleywegt, Gerard J, Kobayashi, Naohiro, Lange, Oliver F, Markley, John L, Montelione, Gaetano T, Nilges, Michael, Ragan, Timothy J, Schwieters, Charles D, Tejero, Roberto, Ulrich, Eldon L, Velankar, Sameer, Vranken, Wim F, Wedell, Jonathan R, Westbrook, John, Wishart, David S, Vuister, Geerten W
Published 2015

Genome3D: exploiting structure to help users understand their sequences

by Lewis, Tony E., Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L., Buchan, Daniel W.A., Chothia, Cyrus, Cozzetto, Domenico, Dana, José M., Filippis, Ioannis, Gough, Julian, Jones, David T., Kelley, Lawrence A., Kleywegt, Gerard J., Minneci, Federico, Mistry, Jaina, Murzin, Alexey G., Ochoa-Montaño, Bernardo, Oates, Matt E., Punta, Marco, Rackham, Owen J.L., Stahlhacke, Jonathan, Sternberg, Michael J.E., Velankar, Sameer, Orengo, Christine
Published 2015

The complex portal - an encyclopaedia of macromolecular complexes

by Meldal, Birgit H.M., Forner-Martinez, Oscar, Costanzo, Maria C., Dana, Jose, Demeter, Janos, Dumousseau, Marine, Dwight, Selina S., Gaulton, Anna, Licata, Luana, Melidoni, Anna N., Ricard-Blum, Sylvie, Roechert, Bernd, Skyzypek, Marek S., Tiwari, Manu, Velankar, Sameer, Wong, Edith D., Hermjakob, Henning, Orchard, Sandra
Published 2015

PDBe: Protein Data Bank in Europe

by Gutmanas, Aleksandras, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Bochet, Estelle, Conroy, Matthew J., Dana, Jose M., Fernandez Montecelo, Manuel A., van Ginkel, Glen, Gore, Swanand P., Haslam, Pauline, Hatherley, Rowan, Hendrickx, Pieter M.S., Hirshberg, Miriam, Lagerstedt, Ingvar, Mir, Saqib, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Rinaldi, Luana, Sahni, Gaurav, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Velankar, Sameer, Wainwright, Michael E., Kleywegt, Gerard J.
Published 2014

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

by Velankar, Sameer, van Ginkel, Glen, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Conroy, Matthew J., Dana, Jose M., Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hendrickx, Pieter M. S., Lagerstedt, Ingvar, Mir, Saqib, Fernandez Montecelo, Manuel A., Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Wainwright, Michael E., Deshpande, Mandar S., Iudin, Andrii, Sahni, Gaurav, Salavert Torres, Jose, Hirshberg, Miriam, Mak, Lora, Nadzirin, Nurul, Armstrong, David R., Clark, Alice R., Smart, Oliver S., Korir, Paul K., Kleywegt, Gerard J.
Published 2016

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

by Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.
Published 2016