Regression-Based Ranking of Pathogen Strains with Respect to Their Contribution to Natural Epidemics

by Soubeyrand, Samuel, Tollenaere, Charlotte, Haon-Lasportes, Emilie, Laine, Anna-Liisa
Published 2014

A Bayesian Inference Framework to Reconstruct Transmission Trees Using Epidemiological and Genetic Data

by Morelli, Marco J., Thébaud, Gaël, Chadœuf, Joël, King, Donald P., Haydon, Daniel T., Soubeyrand, Samuel
Published 2012

Long-Distance Wind-Dispersal of Spores in a Fungal Plant Pathogen: Estimation of Anisotropic Dispersal Kernels from an Extensive Field Experiment

by Rieux, Adrien, Soubeyrand, Samuel, Bonnot, François, Klein, Etienne K., Ngando, Josue E., Mehl, Andreas, Ravigne, Virginie, Carlier, Jean, de Lapeyre de Bellaire, Luc
Published 2014

OutbreakTools: A new platform for disease outbreak analysis using the R software

by Jombart, Thibaut, Aanensen, David M., Baguelin, Marc, Birrell, Paul, Cauchemez, Simon, Camacho, Anton, Colijn, Caroline, Collins, Caitlin, Cori, Anne, Didelot, Xavier, Fraser, Christophe, Frost, Simon, Hens, Niel, Hugues, Joseph, Höhle, Michael, Opatowski, Lulla, Rambaut, Andrew, Ratmann, Oliver, Soubeyrand, Samuel, Suchard, Marc A., Wallinga, Jacco, Ypma, Rolf, Ferguson, Neil
Published 2014