Mapping antigenic variation in HIV-1 envelope

by Frost, Simon
Published 2013

Modelling tree shape and structure in viral phylodynamics

by Frost, Simon D. W., Volz, Erik M.
Published 2013

Inferring the Source of Transmission with Phylogenetic Data

by Volz, Erik M., Frost, Simon D. W.
Published 2013

Measuring Asymmetry in Time-Stamped Phylogenies

by Dearlove, Bethany L., Frost, Simon D. W.
Published 2015

Sampling through time and phylodynamic inference with coalescent and birth–death models

by Volz, Erik M., Frost, Simon D. W.
Published 2014

Understanding Drivers of Phylogenetic Clustering in Molecular Epidemiological Studies of HIV

by Frost, Simon D. W., Pillay, Deenan
Published 2015

An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope

by Poon, Art F. Y, Lewis, Fraser I, Pond, Sergei L. Kosakovsky, Frost, Simon D. W
Published 2007

Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope

by Poon, Art F. Y, Lewis, Fraser I, Pond, Sergei L. Kosakovsky, Frost, Simon D. W
Published 2007

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection

by Volz, Erik M., Koopman, James S., Ward, Melissa J., Brown, Andrew Leigh, Frost, Simon D. W.
Published 2012

Respondent driven sampling—where we are and where should we be going?

by White, Richard G, Lansky, Amy, Goel, Sharad, Wilson, David, Hladik, Wolfgang, Hakim, Avi, Frost, Simon DW
Published 2012

Eight challenges in phylodynamic inference

by Frost, Simon D.W., Pybus, Oliver G., Gog, Julia R., Viboud, Cecile, Bonhoeffer, Sebastian, Bedford, Trevor
Published 2015

Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses

by Kosakovsky Pond, Sergei L, Frost, Simon D. W, Grossman, Zehava, Gravenor, Michael B, Richman, Douglas D, Brown, Andrew J. Leigh
Published 2006

Can Non-lytic CD8+ T Cells Drive HIV-1 Escape?

by Seich al Basatena, Nafisa-Katrin, Chatzimichalis, Konstantinos, Graw, Frederik, Frost, Simon D. W., Regoes, Roland R., Asquith, Becca
Published 2013

Assigning and visualizing germline genes in antibody repertoires

by Frost, Simon D. W., Murrell, Ben, Hossain, A. S. Md. Mukarram, Silverman, Gregg J., Pond, Sergei L. Kosakovsky
Published 2015

Evaluation of the role of location and distance in recruitment in respondent-driven sampling

by McCreesh, Nicky, Johnston, Lisa G, Copas, Andrew, Sonnenberg, Pam, Seeley, Janet, Hayes, Richard J, Frost, Simon DW, White, Richard G
Published 2011

Adaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C Virus

by Poon, Art F. Y, Kosakovsky Pond, Sergei L., Bennett, Phil, Richman, Douglas D, Leigh Brown, Andrew J., Frost, Simon D. W
Published 2007

Transmitted Drug Resistance in the CFAR Network of Integrated Clinical Systems Cohort: Prevalence and Effects on Pre-Therapy CD4 and Viral Load

by Poon, Art F. Y., Aldous, Jeannette L., Mathews, W. Christopher, Kitahata, Mari, Kahn, James S., Saag, Michael S., Rodríguez, Benigno, Boswell, Stephen L., Frost, Simon D. W., Haubrich, Richard H.
Published 2011

Respondent-Driven Sampling of Injection Drug Users in Two U.S.–Mexico Border Cities: Recruitment Dynamics and Impact on Estimates of HIV and Syphilis Prevalence

by Frost, Simon D. W., Brouwer, Kimberly C., Firestone Cruz, Michelle A., Ramos, Rebeca, Ramos, Maria Elena, Lozada, Remedios M., Magis-Rodriguez, Carlos, Strathdee, Steffanie A.
Published 2006

Respondent Driven Sampling: Determinants of Recruitment and a Method to Improve Point Estimation

by McCreesh, Nicky, Copas, Andrew, Seeley, Janet, Johnston, Lisa G., Sonnenberg, Pam, Hayes, Richard J., Frost, Simon D. W., White, Richard G.
Published 2013

Improving ILI Surveillance using Hospital Staff Influenza-like Absence (ILA)

by Drumright, Lydia, Frost, Simon D., Catchpole, Mike, Harrison, John, Atkins, Mark, Parker, Penny, Elliot, Alex J., Fleming, Douglas M., Holmes, Alison H.
Published 2013