Single-cell analysis reveals key roles for Bcl11a in regulating stem cell fate decisions

by Powers, Ashley N, Satija, Rahul
Published 2015

The Atypical Calpains: Evolutionary Analyses and Roles in Caenorhabditis elegans Cellular Degeneration

by Joyce, Peter I., Satija, Rahul, Chen, Maozi, Kuwabara, Patricia E.
Published 2012

Human dendritic cells (DCs) are derived from distinct circulating precursors that are precommitted to become CD1c+ or CD141+ DCs

by Breton, Gaëlle, Zheng, Shiwei, Valieris, Renan, Tojal da Silva, Israel, Satija, Rahul, Nussenzweig, Michel C.
Published 2016

Spatial reconstruction of single-cell gene expression

by Satija, Rahul, Farrell, Jeffrey A., Gennert, David, Schier, Alexander F., Regev, Aviv
Published 2015

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

by Shalek, Alex K., Satija, Rahul, Adiconis, Xian, Gertner, Rona S., Gaublomme, Jellert T., Raychowdhury, Raktima, Schwartz, Schragi, Yosef, Nir, Malboeuf, Christine, Lu, Diana, Trombetta, John T., Gennert, Dave, Gnirke, Andreas, Goren, Alon, Hacohen, Nir, Levin, Joshua Z., Park, Hongkun, Regev, Aviv
Published 2013

Comprehensive comparative analysis of RNA sequencing methods for degraded or low input samples

by Adiconis, Xian, Borges-Rivera, Diego, Satija, Rahul, DeLuca, David S., Busby, Michele A., Berlin, Aaron M., Sivachenko, Andrey, Thompson, Dawn Anne, Wysoker, Alec, Fennell, Timothy, Gnirke, Andreas, Pochet, Nathalie, Regev, Aviv, Levin, Joshua Z.
Published 2013

Deconstructing transcriptional heterogeneity in pluripotent stem cells

by Kumar, Roshan M., Cahan, Patrick, Shalek, Alex K., Satija, Rahul, DaleyKeyser, AJay, Li, Hu, Zhang, Jin, Pardee, Keith, Gennert, David, Trombetta, John J., Ferrante, Thomas C., Regev, Aviv, Daley, George Q., Collins, James J.
Published 2014

Dynamic regulatory network controlling Th17 cell differentiation

by Yosef, Nir, Shalek, Alex K., Gaublomme, Jellert T., Jin, Hulin, Lee, Youjin, Awasthi, Amit, Wu, Chuan, Karwacz, Katarzyna, Xiao, Sheng, Jorgolli, Marsela, Gennert, David, Satija, Rahul, Shakya, Arvind, Lu, Diana Y., Trombetta, John J., Pillai, Meenu R., Ratcliffe, Peter J., Coleman, Mathew L., Bix, Mark, Tantin, Dean, Park, Hongkun, Kuchroo, Vijay K., Regev, Aviv
Published 2013

The Regulatory Factor ZFHX3 Modifies Circadian Function in SCN via an AT Motif-Driven Axis

by Parsons, Michael J., Brancaccio, Marco, Sethi, Siddharth, Maywood, Elizabeth S., Satija, Rahul, Edwards, Jessica K., Jagannath, Aarti, Couch, Yvonne, Finelli, Mattéa J., Smyllie, Nicola J., Esapa, Christopher, Butler, Rachel, Barnard, Alun R., Chesham, Johanna E., Saito, Shoko, Joynson, Greg, Wells, Sara, Foster, Russell G., Oliver, Peter L., Simon, Michelle M., Mallon, Ann-Marie, Hastings, Michael H., Nolan, Patrick M.
Published 2015

Single cell RNA Seq reveals dynamic paracrine control of cellular variation

by Shalek, Alex K., Satija, Rahul, Shuga, Joe, Trombetta, John J., Gennert, Dave, Lu, Diana, Chen, Peilin, Gertner, Rona S., Gaublomme, Jellert T., Yosef, Nir, Schwartz, Schraga, Fowler, Brian, Weaver, Suzanne, Wang, Jing, Wang, Xiaohui, Ding, Ruihua, Raychowdhury, Raktima, Friedman, Nir, Hacohen, Nir, Park, Hongkun, May, Andrew P., Regev, Aviv
Published 2014

Whole exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer

by Lohr, Jens G., Adalsteinsson, Viktor A., Cibulskis, Kristian, Choudhury, Atish D., Rosenberg, Mara, Cruz-Gordillo, Peter, Francis, Joshua, Zhang, Cheng-Zhong, Shalek, Alex K., Satija, Rahul, Trombetta, John T., Lu, Diana, Tallapragada, Naren, Tahirova, Narmin, Kim, Sora, Blumenstiel, Brendan, Sougnez, Carrie, Lowe, Alarice, Wong, Bang, Auclair, Daniel, Van Allen, Eliezer M., Nakabayashi, Mari, Lis, Rosina T., Lee, Gwo-Shu M., Li, Tiantian, Chabot, Matthew S., Ly, Amy, Taplin, Mary-Ellen, Clancy, Thomas E., Loda, Massimo, Regev, Aviv, Meyerson, Matthew, Hahn, William C., Kantoff, Philip W., Golub, Todd R., Getz, Gad, Boehm, Jesse S., Love, J. Christopher
Published 2014