Trends and challenges in computational RNA biology

by Selega, Alina, Sanguinetti, Guido
Published 2016

Cox process representation and inference for stochastic reaction–diffusion processes

by Schnoerr, David, Grima, Ramon, Sanguinetti, Guido
Published 2016

Combining tree-based and dynamical systems for the inference of gene regulatory networks

by Huynh-Thu, Vân Anh, Sanguinetti, Guido
Published 2015

M3D: a kernel-based test for spatially correlated changes in methylation profiles

by Mayo, Tom R., Schweikert, Gabriele, Sanguinetti, Guido
Published 2015

MMDiff: quantitative testing for shape changes in ChIP-Seq data sets

by Schweikert, Gabriele, Cseke, Botond, Clouaire, Thomas, Bird, Adrian, Sanguinetti, Guido
Published 2013

A Bayesian approach for structure learning in oscillating regulatory networks

by Trejo Banos, Daniel, Millar, Andrew J., Sanguinetti, Guido
Published 2015

Analysis of transcript changes in a heme-deficient mutant of Escherichia coli in response to CORM-3 [Ru(CO)3Cl(glycinate)]

by Wilson, Jayne Louise, McLean, Samantha, Begg, Ronald, Sanguinetti, Guido, Poole, Robert K.
Published 2015

Adaptation of anaerobic cultures of E scherichia coli  K‐12 in response to environmental trimethylamine‐N‐oxide

by Denby, Katie J., Rolfe, Matthew D., Crick, Ellen, Sanguinetti, Guido, Poole, Robert K., Green, Jeffrey
Published 2015

Systems analysis of transcription factor activities in environments with stable and dynamic oxygen concentrations

by Rolfe, Matthew D., Ocone, Andrea, Stapleton, Melanie R., Hall, Simon, Trotter, Eleanor W., Poole, Robert K., Sanguinetti, Guido, Green, Jeffrey
Published 2012

Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling

by Barrass, J. David, Reid, Jane E. A., Huang, Yuanhua, Hector, Ralph D., Sanguinetti, Guido, Beggs, Jean D., Granneman, Sander
Published 2015

Reprogramming of Escherichia coli K-12 Metabolism during the Initial Phase of Transition from an Anaerobic to a Micro-Aerobic Environment

by Trotter, Eleanor W., Rolfe, Matthew D., Hounslow, Andrea M., Craven, C. Jeremy, Williamson, Michael P., Sanguinetti, Guido, Poole, Robert K., Green, Jeffrey
Published 2011

Strand‐specific, high‐resolution mapping of modified RNA polymerase II

by Milligan, Laura, Huynh‐Thu, Vân A, Delan‐Forino, Clémentine, Tuck, Alex, Petfalski, Elisabeth, Lombraña, Rodrigo, Sanguinetti, Guido, Kudla, Grzegorz, Tollervey, David
Published 2016

RiboAbacus: a model trained on polyribosome images predicts ribosome density and translational efficiency from mammalian transcriptomes

by Lauria, Fabio, Tebaldi, Toma, Lunelli, Lorenzo, Struffi, Paolo, Gatto, Pamela, Pugliese, Andrea, Brigotti, Maurizio, Montanaro, Lorenzo, Ciribilli, Yari, Inga, Alberto, Quattrone, Alessandro, Sanguinetti, Guido, Viero, Gabriella
Published 2015

CO-Releasing Molecules Have Nonheme Targets in Bacteria: Transcriptomic, Mathematical Modeling and Biochemical Analyses of CORM-3 [Ru(CO)3Cl(glycinate)] Actions on a Heme-Deficient...

by Wilson, Jayne Louise, Wareham, Lauren K., McLean, Samantha, Begg, Ronald, Greaves, Sarah, Mann, Brian E., Sanguinetti, Guido, Poole, Robert K.
Published 2015

CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress

by Holyoake, Louise V., Hunt, Stuart, Sanguinetti, Guido, Cook, Gregory M., Howard, Mark J., Rowe, Michelle L., Poole, Robert K., Shepherd, Mark
Published 2016

Carbon Monoxide Gas Is Not Inert, but Global, in Its Consequences for Bacterial Gene Expression, Iron Acquisition, and Antibiotic Resistance

by Wareham, Lauren K., Begg, Ronald, Jesse, Helen E., van Beilen, Johan W.A., Ali, Salar, Svistunenko, Dimitri, McLean, Samantha, Hellingwerf, Klaas J., Sanguinetti, Guido, Poole, Robert K.
Published 2016