Using Sybil for interactive comparative genomics of microbes on the web

by Riley, David R., Angiuoli, Samuel V., Crabtree, Jonathan, Dunning Hotopp, Julie C., Tettelin, Hervé
Published 2012

Parallel Evolution of Streptococcus pneumoniae and Streptococcus mitis to Pathogenic and Mutualistic Lifestyles

by Kilian, Mogens, Riley, David R., Jensen, Anders, Brüggemann, Holger, Tettelin, Hervé
Published 2014

Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples

by Riley, David R., Sieber, Karsten B., Robinson, Kelly M., White, James Robert, Ganesan, Ashwinkumar, Nourbakhsh, Syrus, Dunning Hotopp, Julie C.
Published 2013

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

by Angiuoli, Samuel V, Matalka, Malcolm, Gussman, Aaron, Galens, Kevin, Vangala, Mahesh, Riley, David R, Arze, Cesar, White, James R, White, Owen, Fricke, W Florian
Published 2011

Whole Genome Sequencing to Investigate the Emergence of Clonal Complex 23 Neisseria meningitidis Serogroup Y Disease in the United States

by Krauland, Mary G., Hotopp, Julie C. Dunning, Riley, David R., Daugherty, Sean C., Marsh, Jane W., Messonnier, Nancy E., Mayer, Leonard W., Tettelin, Hervé, Harrison, Lee H.
Published 2012

Genome Sequences of Two Pathogenic Streptococcus agalactiae Isolates from the One-Humped Camel Camelus dromedarius

by Zubair, Saima, de Villiers, Etienne P., Younan, Mario, Andersson, Göran, Tettelin, Herve, Riley, David R., Jores, Joerg, Bongcam-Rudloff, Erik, Bishop, Richard P.
Published 2013

Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection

by Kimaro Mlacha, Sheila Z, Peret, Teresa C T, Kumar, Nikhil, Romero-Steiner, Sandra, Dunning Hotopp, Julie C, Ishmael, Nadeeza, Grinblat-Huse, Valerie, Riley, David R, Erdman, Dean D, Carlone, George M, Sampson, Jacquelyn, Scott, J Anthony G, Tettelin, Hervé
Published 2013

Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi

by Ioannidis, Panagiotis, Johnston, Kelly L, Riley, David R, Kumar, Nikhil, White, James R, Olarte, Karen T, Ott, Sandra, Tallon, Luke J, Foster, Jeremy M, Taylor, Mark J, Dunning Hotopp, Julie C
Published 2013

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

by Donati, Claudio, Hiller, N Luisa, Tettelin, Hervé, Muzzi, Alessandro, Croucher, Nicholas J, Angiuoli, Samuel V, Oggioni, Marco, Dunning Hotopp, Julie C, Hu, Fen Z, Riley, David R, Covacci, Antonello, Mitchell, Tim J, Bentley, Stephen D, Kilian, Morgens, Ehrlich, Garth D, Rappuoli, Rino, Moxon, E Richard, Masignani, Vega
Published 2010

Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation

by Mongodin, Emmanuel F, Casjens, Sherwood R, Bruno, John F, Xu, Yun, Drabek, Elliott Franco, Riley, David R, Cantarel, Brandi L, Pagan, Pedro E, Hernandez, Yozen A, Vargas, Levy C, Dunn, John J, Schutzer, Steven E, Fraser, Claire M, Qiu, Wei-Gang, Luft, Benjamin J
Published 2013

Correction: Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species

by Donati, Claudio, Hiller, N Luisa, Tettelin, Hervé, Muzzi, Alessandro, Croucher, Nicholas J, Angiuoli, Samuel V, Oggioni, Marco, Hotopp, Julie C Dunning, Hu, Fen Z, Riley, David R, Covacci, Antonello, Mitchell, Tim J, Bentley, Stephen D, Kilian, Mogens, Ehrlich, Garth D, Rappuoli, Rino, Moxon, E Richard, Masignani, Vega
Published 2011

Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells

by Kimaro Mlacha, Sheila Z, Romero-Steiner, Sandra, Dunning Hotopp, Julie C, Kumar, Nikhil, Ishmael, Nadeeza, Riley, David R, Farooq, Umar, Creasy, Todd H, Tallon, Luke J, Liu, Xinyue, Goldsmith, Cynthia S, Sampson, Jacquelyn, Carlone, George M, Hollingshead, Susan K, Scott, J Anthony G, Tettelin, Hervé
Published 2013