Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes

by Davis, James J., Xia, Fangfang, Overbeek, Ross A., Olsen, Gary J.
Published 2013

In search of genome annotation consistency: solid gene clusters and how to use them

by Davis, James J., Olsen, Gary J., Overbeek, Ross, Vonstein, Veronika, Xia, Fangfang
Published 2013

The repABC Plasmids with Quorum-Regulated Transfer Systems in Members of the Rhizobiales Divide into Two Structurally and Separately Evolving Groups

by Wetzel, Margaret E., Olsen, Gary J., Chakravartty, Vandana, Farrand, Stephen K.
Published 2015

PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database

by Davis, James J., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Pusch, Gordon D., Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R., Yoo, Hyunseung
Published 2016

SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models

by Aziz, Ramy K., Devoid, Scott, Disz, Terrence, Edwards, Robert A., Henry, Christopher S., Olsen, Gary J., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Stevens, Rick L., Vonstein, Veronika, Xia, Fangfang
Published 2012

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

by Overbeek, Ross, Olson, Robert, Pusch, Gordon D., Olsen, Gary J., Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Parrello, Bruce, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang, Stevens, Rick
Published 2014

Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum

by Matthews, T. David, Schmieder, Robert, Silva, Genivaldo G. Z., Busch, Julia, Cassman, Noriko, Dutilh, Bas E., Green, Dawn, Matlock, Brian, Heffernan, Brian, Olsen, Gary J., Farris Hanna, Leigh, Schifferli, Dieter M., Maloy, Stanley, Dinsdale, Elizabeth A., Edwards, Robert A.
Published 2015

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

by Brettin, Thomas, Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Thomason, James A., Stevens, Rick, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang
Published 2015

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation

by McNeil, Leslie Klis, Reich, Claudia, Aziz, Ramy K., Bartels, Daniela, Cohoon, Matthew, Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Hwang, Kaitlyn, Kubal, Michael, Margaryan, Gohar Rem, Meyer, Folker, Mihalo, William, Olsen, Gary J., Olson, Robert, Osterman, Andrei, Paarmann, Daniel, Paczian, Tobias, Parrello, Bruce, Pusch, Gordon D., Rodionov, Dmitry A., Shi, Xinghua, Vassieva, Olga, Vonstein, Veronika, Zagnitko, Olga, Xia, Fangfang, Zinner, Jenifer, Overbeek, Ross, Stevens, Rick
Published 2007

The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes

by Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, de Crécy-Lagard, Valérie, Diaz, Naryttza, Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei, Portnoy, Vasiliy, Pusch, Gordon D., Rodionov, Dmitry A., Rückert, Christian, Steiner, Jason, Stevens, Rick, Thiele, Ines, Vassieva, Olga, Ye, Yuzhen, Zagnitko, Olga, Vonstein, Veronika
Published 2005