GenomePeek—an online tool for prokaryotic genome and metagenome analysis

by McNair, Katelyn, Edwards, Robert A.
Published 2015

An application of statistics to comparative metagenomics

by Rodriguez-Brito, Beltran, Rohwer, Forest, Edwards, Robert A
Published 2006

PHACTS, a computational approach to classifying the lifestyle of phages

by McNair, Katelyn, Bailey, Barbara A., Edwards, Robert A.
Published 2012

Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets

by Aziz, Ramy K, Dwivedi, Bhakti, Breitbart, Mya, Edwards, Robert A
Published 2011

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

by Akhter, Sajia, Aziz, Ramy K., Edwards, Robert A.
Published 2012

PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity

by Dwivedi, Bhakti, Schmieder, Robert, Goldsmith, Dawn B, Edwards, Robert A, Breitbart, Mya
Published 2012

Diversification of the Salmonella Fimbriae: A Model of Macro- and Microevolution

by Yue, Min, Rankin, Shelley C., Blanchet, Ryan T., Nulton, James D., Edwards, Robert A., Schifferli, Dieter M.
Published 2012

Metabolic trajectory of cellular differentiation in small intestine by Phasor Fluorescence Lifetime Microscopy of NADH

by Stringari, Chiara, Edwards, Robert A., Pate, Kira T., Waterman, Marian L., Donovan, Peter J., Gratton, Enrico
Published 2012

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

by Dwivedi, Bhakti, Xue, Bingjie, Lundin, Daniel, Edwards, Robert A, Breitbart, Mya
Published 2013

Real Time Metagenomics: Using k-mers to annotate metagenomes

by Edwards, Robert A., Olson, Robert, Disz, Terry, Pusch, Gordon D., Vonstein, Veronika, Stevens, Rick, Overbeek, Ross
Published 2012

Applying Shannon's information theory to bacterial and phage genomes and metagenomes

by Akhter, Sajia, Bailey, Barbara A., Salamon, Peter, Aziz, Ramy K., Edwards, Robert A.
Published 2013

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

by Silva, Genivaldo Gueiros Z., Cuevas, Daniel A., Dutilh, Bas E., Edwards, Robert A.
Published 2014

Microbial genomic taxonomy

by Thompson, Cristiane C, Chimetto, Luciane, Edwards, Robert A, Swings, Jean, Stackebrandt, Erko, Thompson, Fabiano L
Published 2013

Draft Genome Sequence of the Fish Pathogen Piscirickettsia salmonis

by Eppinger, Mark, McNair, Katelyn, Zogaj, Xhavit, Dinsdale, Elizabeth A., Edwards, Robert A., Klose, Karl E.
Published 2013

From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model

by Cuevas, Daniel A., Edirisinghe, Janaka, Henry, Chris S., Overbeek, Ross, O’Connell, Taylor G., Edwards, Robert A.
Published 2016

Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes

by Aziz, Ramy K., Dwivedi, Bhakti, Akhter, Sajia, Breitbart, Mya, Edwards, Robert A.
Published 2015

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

by Silva, Genivaldo Gueiros Z., Green, Kevin T., Dutilh, Bas E., Edwards, Robert A.
Published 2016

Reference-independent comparative metagenomics using cross-assembly: crAss

by Dutilh, Bas E., Schmieder, Robert, Nulton, Jim, Felts, Ben, Salamon, Peter, Edwards, Robert A., Mokili, John L.
Published 2012

Explaining microbial phenotypes on a genomic scale: GWAS for microbes

by Dutilh, Bas E., Backus, Lennart, Edwards, Robert A., Wels, Michiel, Bayjanov, Jumamurat R., van Hijum, Sacha A.F.T.
Published 2013

Microcins mediate competition among Enterobacteriaceae in the inflamed gut

by Sassone-Corsi, Martina, Nuccio, Sean-Paul, Liu, Henry, Hernandez, Dulcemaria, Vu, Christine T., Takahashi, Amy A., Edwards, Robert A., Raffatellu, Manuela
Published 2016