Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes

by Davis, James J., Xia, Fangfang, Overbeek, Ross A., Olsen, Gary J.
Published 2013

In search of genome annotation consistency: solid gene clusters and how to use them

by Davis, James J., Olsen, Gary J., Overbeek, Ross, Vonstein, Veronika, Xia, Fangfang
Published 2013

18F-Fluorothymidine-Pet Imaging of Glioblastoma Multiforme: Effects of Radiation Therapy on Radiotracer Uptake and Molecular Biomarker Patterns

by Chandrasekaran, Sanjay, Hollander, Andrew, Xu, Xiangsheng, Benci, Joseph L., Davis, James J., Dorsey, Jay F., Kao, Gary
Published 2013

Antimicrobial Resistance Prediction in PATRIC and RAST

by Davis, James J., Boisvert, Sébastien, Brettin, Thomas, Kenyon, Ronald W., Mao, Chunhong, Olson, Robert, Overbeek, Ross, Santerre, John, Shukla, Maulik, Wattam, Alice R., Will, Rebecca, Xia, Fangfang, Stevens, Rick
Published 2016

PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database

by Davis, James J., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Pusch, Gordon D., Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R., Yoo, Hyunseung
Published 2016

Selective Targeting of Brain Tumors with Gold Nanoparticle-Induced Radiosensitization

by Joh, Daniel Y., Sun, Lova, Stangl, Melissa, Al Zaki, Ajlan, Murty, Surya, Santoiemma, Phillip P., Davis, James J., Baumann, Brian C., Alonso-Basanta, Michelle, Bhang, Dongha, Kao, Gary D., Tsourkas, Andrew, Dorsey, Jay F.
Published 2013

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

by Overbeek, Ross, Olson, Robert, Pusch, Gordon D., Olsen, Gary J., Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Parrello, Bruce, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang, Stevens, Rick
Published 2014

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation

by Faria, José P., Davis, James J., Edirisinghe, Janaka N., Taylor, Ronald C., Weisenhorn, Pamela, Olson, Robert D., Stevens, Rick L., Rocha, Miguel, Rocha, Isabel, Best, Aaron A., DeJongh, Matthew, Tintle, Nathan L., Parrello, Bruce, Overbeek, Ross, Henry, Christopher S.
Published 2016

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

by Brettin, Thomas, Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Thomason, James A., Stevens, Rick, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang
Published 2015

Enabling comparative modeling of closely related genomes: example genus Brucella

by Faria, José P., Edirisinghe, Janaka N., Davis, James J., Disz, Terrence, Hausmann, Anna, Henry, Christopher S., Olson, Robert, Overbeek, Ross A., Pusch, Gordon D., Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R.
Published 2014