S-MART, A Software Toolbox to Aid RNA-seq Data Analysis

by Zytnicki, Matthias, Quesneville, Hadi
Published 2011

Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter

by Maumus, Florian, Quesneville, Hadi
Published 2014

Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana

by Maumus, Florian, Quesneville, Hadi
Published 2014

P elements and MITE relatives in the whole genome sequence of Anopheles gambiae

by Quesneville, Hadi, Nouaud, Danielle, Anxolabéhère, Dominique
Published 2006

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

by Vitte, Clémentine, Panaud, Olivier, Quesneville, Hadi
Published 2007

Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes

by Amselem, Joëlle, Lebrun, Marc-Henri, Quesneville, Hadi
Published 2015

Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

by Ahmed, Ikhlak, Sarazin, Alexis, Bowler, Chris, Colot, Vincent, Quesneville, Hadi
Published 2011

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome

by Bergman, Casey M, Quesneville, Hadi, Anxolabéhère, Dominique, Ashburner, Michael
Published 2006

Detection of transposable elements by their compositional bias

by Andrieu, Olivier, Fiston, Anna-Sophie, Anxolabéhère, Dominique, Quesneville, Hadi
Published 2004

Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

by Jouffroy, Ophélie, Saha, Surya, Mueller, Lukas, Quesneville, Hadi, Maumus, Florian
Published 2016

Combined Evidence Annotation of Transposable Elements in Genome Sequences

by Quesneville, Hadi, Bergman, Casey M, Andrieu, Olivier, Autard, Delphine, Nouaud, Danielle, Ashburner, Michael, Anxolabehere, Dominique
Published 2005

Correlation of LNCR rasiRNAs Expression with Heterochromatin Formation during Development of the Holocentric Insect Spodoptera frugiperda

by Stanojcic, Slavica, Gimenez, Sylvie, Permal, Emmanuelle, Cousserans, François, Quesneville, Hadi, Fournier, Philippe, d'Alençon, Emmanuelle
Published 2011

PASTEC: An Automatic Transposable Element Classification Tool

by Hoede, Claire, Arnoux, Sandie, Moisset, Mark, Chaumier, Timothée, Inizan, Olivier, Jamilloux, Véronique, Quesneville, Hadi
Published 2014

Shared Subgenome Dominance Following Polyploidization Explains Grass Genome Evolutionary Plasticity from a Seven Protochromosome Ancestor with 16K Protogenes

by Murat, Florent, Zhang, Rongzhi, Guizard, Sébastien, Flores, Raphael, Armero, Alix, Pont, Caroline, Steinbach, Delphine, Quesneville, Hadi, Cooke, Richard, Salse, Jerome
Published 2013

Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction

by Murat, Florent, Louis, Alexandra, Maumus, Florian, Armero, Alex, Cook, Richard, Quesneville, Hadi, Crollius, Hugues Roest, Salse, Jerome
Published 2016

Understanding Brassicaceae evolution through ancestral genome reconstruction

by Murat, Florent, Louis, Alexandra, Maumus, Florian, Armero, Alix, Cooke, Richard, Quesneville, Hadi, Crollius, Hugues Roest, Salse, Jerome
Published 2015

International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories

by Ainouche, Abdelkader, Bétermier, Mireille, Chandler, Mick, Cordaux, Richard, Cristofari, Gaël, Deragon, Jean-Marc, Lesage, Pascale, Panaud, Olivier, Quesneville, Hadi, Vaury, Chantal, Vieira, Cristina, Vitte, Clémentine
Published 2012

International Congress on Transposable elements (ICTE 2016) in Saint Malo: mobile elements under the sun of Brittany

by Lesage, Pascale, Bétermier, Mireille, Bridier-Nahmias, Antoine, Chandler, Michael, Chambeyron, Séverine, Cristofari, Gael, Gilbert, Nicolas, Quesneville, Hadi, Vaury, Chantal, Volff, Jean-Nicolas
Published 2016

Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon

by Amselem, Joelle, Vigouroux, Marielle, Oberhaensli, Simone, Brown, James K. M., Bindschedler, Laurence V., Skamnioti, Pari, Wicker, Thomas, Spanu, Pietro D., Quesneville, Hadi, Sacristán, Soledad
Published 2015

Organization and evolution of transposable elements along the bread wheat chromosome 3B

by Daron, Josquin, Glover, Natasha, Pingault, Lise, Theil, Sébastien, Jamilloux, Véronique, Paux, Etienne, Barbe, Valérie, Mangenot, Sophie, Alberti, Adriana, Wincker, Patrick, Quesneville, Hadi, Feuillet, Catherine, Choulet, Frédéric
Published 2014