Learning biophysically-motivated parameters for alpha helix prediction

by Gassend, Blaise, O'Donnell, Charles W, Thies, William, Lee, Andrew, van Dijk, Marten, Devadas, Srinivas
Published 2007

A method for probing the mutational landscape of amyloid structure

by O'Donnell, Charles W., Waldispühl, Jérôme, Lis, Mieszko, Halfmann, Randal, Devadas, Srinivas, Lindquist, Susan, Berger, Bonnie
Published 2011

STITCHER: Dynamic assembly of likely amyloid and prion β-structures from secondary structure predictions

by Bryan, Allen W, O’Donnell, Charles W, Menke, Matthew, Cowen, Lenore J, Lindquist, Susan, Berger, Bonnie
Published 2012

A global sampling approach to designing and reengineering RNA secondary structures

by Levin, Alex, Lis, Mieszko, Ponty, Yann, O’Donnell, Charles W., Devadas, Srinivas, Berger, Bonnie, Waldispühl, Jérôme
Published 2012

MARIS: Method for Analyzing RNA following Intracellular Sorting

by Hrvatin, Siniša, Deng, Francis, O'Donnell, Charles W., Gifford, David K., Melton, Douglas A.
Published 2014

Discovery of non-directional and directional pioneer transcription factors by modeling DNase profile magnitude and shape

by Sherwood, Richard I, Hashimoto, Tatsunori, O'Donnell, Charles W, Lewis, Sophia, Barkal, Amira A, van Hoff, John Peter, Karun, Vivek, Jaakkola, Tommi, Gifford, David K
Published 2014