From co-expression to co-regulation: how many microarray experiments do we need?

by Yeung, Ka Yee, Medvedovic, Mario, Bumgarner, Roger E
Published 2004

Clustering gene-expression data with repeated measurements

by Yeung, Ka Yee, Medvedovic, Mario, Bumgarner, Roger E
Published 2003

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments

by Sartor, Maureen A, Tomlinson, Craig R, Wesselkamper, Scott C, Sivaganesan, Siva, Leikauf, George D, Medvedovic, Mario
Published 2006

Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data

by Liu, Xiangdong, Jessen, Walter J, Sivaganesan, Siva, Aronow, Bruce J, Medvedovic, Mario
Published 2007

Expression of Signaling Components in Embryonic Eyelid Epithelium

by Meng, Qinghang, Jin, Chang, Chen, Yinglei, Chen, Jing, Medvedovic, Mario, Xia, Ying
Published 2014

Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) Analysis Uncovers Broad Changes in Chromatin Structure Resulting from Hexavalent Chromium Exposure

by Ovesen, Jerald L., Fan, Yunxia, Zhang, Xiang, Chen, Jing, Medvedovic, Mario, Xia, Ying, Puga, Alvaro
Published 2014

Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules

by Chen, Jing, Hu, Zhen, Phatak, Mukta, Reichard, John, Freudenberg, Johannes M., Sivaganesan, Siva, Medvedovic, Mario
Published 2013

Disruption of Aryl Hydrocarbon Receptor Homeostatic Levels during Embryonic Stem Cell Differentiation Alters Expression of Homeobox Transcription Factors that Control Cardiomyogene...

by Wang, Qin, Chen, Jing, Ko, Chia-I, Fan, Yunxia, Carreira, Vinicius, Chen, Yinglei, Xia, Ying, Medvedovic, Mario, Puga, Alvaro
Published 2013

IL-31-Driven Skin Remodeling Involves Epidermal Cell Proliferation and Thickening That Lead to Impaired Skin-Barrier Function

by Singh, Brijendra, Jegga, Anil G., Shanmukhappa, Kumar S., Edukulla, Ramakrishna, Khurana, Gurjit H., Medvedovic, Mario, Dillon, Stacey R., Madala, Satish K.
Published 2016

Progression of BRAF-induced thyroid cancer is associated with epithelial-mesenchymal transition requiring concomitant MAP kinase and TGFβ signaling

by Knauf, Jeffrey A, Sartor, Maureen A, Medvedovic, Mario, Lundsmith, Emma, Ryder, Mabel, Salzano, Marcella, Nikiforov, Yuri E, Giordano, Thomas J, Ghossein, Ronald A, Fagin, James A
Published 2011

A new method to remove hybridization bias for interspecies comparison of global gene expression profiles uncovers an association between mRNA sequence divergence and differential g...

by Sartor, Maureen A., Zorn, Aaron M., Schwanekamp, Jennifer A., Halbleib, Danielle, Karyala, Saikumar, Howell, Michael L., Dean, Gary E., Medvedovic, Mario, Tomlinson, Craig R.
Published 2006

Epigenetic Changes with Dietary Soy in Cynomolgus Monkeys

by Howard, Timothy D., Ho, Shuk-Mei, Zhang, Li, Chen, Jing, Cui, Wei, Slager, Rebecca, Gray, Stanton, Hawkins, Gregory A., Medvedovic, Mario, Wagner, Janice D.
Published 2011

Rapid and Weight-Independent Improvement of Glucose Tolerance Induced by a Peptide Designed to Elicit Apoptosis in Adipose Tissue Endothelium

by Kim, Dong-Hoon, Sartor, Maureen A., Bain, James R., Sandoval, Darleen, Stevens, Robert D., Medvedovic, Mario, Newgard, Christopher B., Woods, Stephen C., Seeley, Randy J.
Published 2012

Folliculin Contributes to VHL Tumor Suppressing Activity in Renal Cancer through Regulation of Autophagy

by Bastola, Prabhat, Stratton, Yiwen, Kellner, Emily, Mikhaylova, Olga, Yi, Ying, Sartor, Maureen A., Medvedovic, Mario, Biesiada, Jacek, Meller, Jarek, Czyzyk-Krzeska, Maria F.
Published 2013

Overexpression of Dimethylarginine Dimethylaminohydrolase 1 Attenuates Airway Inflammation in a Mouse Model of Asthma

by Kinker, Kayla G., Gibson, Aaron M., Bass, Stacey A., Day, Brandy P., Deng, Jingyuan, Medvedovic, Mario, Figueroa, Julio A. Landero, Hershey, Gurjit K. Khurana, Chen, Weiguo
Published 2014

Dual Targeting of MEK and PI3K Pathways Attenuates Established and Progressive Pulmonary Fibrosis

by Madala, Satish K., Edukulla, Ramakrishna, Phatak, Mukta, Schmidt, Stephanie, Davidson, Cynthia, Acciani, Thomas H., Korfhagen, Thomas R., Medvedovic, Mario, LeCras, Timothy D., Wagner, Kimberly, Hardie, William D.
Published 2014

DNA methylome changes by estradiol benzoate and bisphenol A links early-life environmental exposures to prostate cancer risk

by Cheong, Ana, Zhang, Xiang, Cheung, Yuk-Yin, Tang, Wan-yee, Chen, Jing, Ye, Shu-Hua, Medvedovic, Mario, Leung, Yuet-Kin, Prins, Gail S., Ho, Shuk-Mei
Published 2016

Loss of IκB kinase β promotes myofibroblast transformation and senescence through activation of the ROS-TGFβ autocrine loop

by Chen, Liang, Peng, Zhimin, Meng, Qinghang, Mongan, Maureen, Wang, Jingcai, Sartor, Maureen, Chen, Jing, Niu, Liang, Medvedovic, Mario, Kao, Winston, Xia, Ying
Published 2016

SPDEF Inhibits Prostate Carcinogenesis by Disrupting a Positive Feedback Loop in Regulation of the Foxm1 Oncogene

by Cheng, Xin-Hua, Black, Markaisa, Ustiyan, Vladimir, Le, Tien, Fulford, Logan, Sridharan, Anusha, Medvedovic, Mario, Kalinichenko, Vladimir V., Whitsett, Jeffrey A., Kalin, Tanya V.
Published 2014

Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale

by Buhule, Olive D., Minster, Ryan L., Hawley, Nicola L., Medvedovic, Mario, Sun, Guangyun, Viali, Satupaitea, Deka, Ranjan, McGarvey, Stephen T., Weeks, Daniel E.
Published 2014