Computational and Statistical Analysis of Protein Mass Spectrometry Data

by Noble, William Stafford, MacCoss, Michael J.
Published 2012

Proteomic Solutions for Analytical Challenges Associated With Alcohol Research

by MacCoss, Michael J., Wu, Christine C.
Published 2008

Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0

by The, Matthew, MacCoss, Michael J., Noble, William S., Käll, Lukas
Published 2016

Rapid empirical discovery of optimal peptides for targeted proteomics

by Stergachis, Andrew B., MacLean, Brendan, Lee, Kristen, Stamatoyannopoulos, John A., MacCoss, Michael J.
Published 2011

Selection on Plant Male Function Genes Identifies Candidates for Reproductive Isolation of Yellow Monkeyflowers

by Aagaard, Jan E., George, Renee D., Fishman, Lila, MacCoss, Michael J., Swanson, Willie J.
Published 2013

Estimating relative abundances of proteins from shotgun proteomics data

by McIlwain, Sean, Mathews, Michael, Bereman, Michael S, Rubel, Edwin W, MacCoss, Michael J, Noble, William Stafford
Published 2012

Evidence for lysine acetylation in the coat protein of a polerovirus

by Cilia, Michelle, Johnson, Richard, Sweeney, Michelle, DeBlasio, Stacy L., Bruce, James E., MacCoss, Michael J., Gray, Stewart M.
Published 2014

The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles

by Topalidou, Irini, Cattin-Ortolá, Jérôme, Pappas, Andrea L., Cooper, Kirsten, Merrihew, Gennifer E., MacCoss, Michael J., Ailion, Michael
Published 2016

Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling

by Dean, Matthew D, Findlay, Geoffrey D, Hoopmann, Michael R, Wu, Christine C, MacCoss, Michael J, Swanson, Willie J, Nachman, Michael W
Published 2011

Label-Free Quantitation of Protein Modifications by Pseudo Selected Reaction Monitoring with Internal Reference Peptides

by Sherrod, Stacy D., Myers, Matthew V., Li, Ming, Myers, Jeremy S., Carpenter, Kristin L., MacLean, Brendan, MacCoss, Michael J., Liebler, Daniel C., Ham, Amy-Joan L.
Published 2012

Genomic and Proteomic Analysis of Schizaphis graminum Reveals Cyclophilin Proteins Are Involved in the Transmission of Cereal Yellow Dwarf Virus

by Tamborindeguy, Cecilia, Bereman, Michael S., DeBlasio, Stacy, Igwe, David, Smith, Dawn M., White, Frank, MacCoss, Michael J., Gray, Stewart M., Cilia, Michelle
Published 2013

Discovery and Targeted LC-MS/MS of Purified Polerovirus Reveals Differences in the Virus-Host Interactome Associated with Altered Aphid Transmission

by Cilia, Michelle, Peter, Kari A., Bereman, Michael S., Howe, Kevin, Fish, Tara, Smith, Dawn, Gildow, Fredrick, MacCoss, Michael J., Thannhauser, Theodore W., Gray, Stewart M.
Published 2012

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling

by Zelter, Alex, Bonomi, Massimiliano, Kim, Jae ook, Umbreit, Neil T., Hoopmann, Michael R., Johnson, Richard, Riffle, Michael, Jaschob, Daniel, MacCoss, Michael J., Moritz, Robert L., Davis, Trisha N.
Published 2015

MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments*

by Rardin, Matthew J., Schilling, Birgit, Cheng, Lin-Yang, MacLean, Brendan X., Sorensen, Dylan J., Sahu, Alexandria K., MacCoss, Michael J., Vitek, Olga, Gibson, Bradford W.
Published 2015

Age modifies respiratory complex I and protein homeostasis in a muscle type‐specific manner

by Kruse, Shane E., Karunadharma, Pabalu P., Basisty, Nathan, Johnson, Richard, Beyer, Richard P., MacCoss, Michael J., Rabinovitch, Peter S., Marcinek, David J.
Published 2015

Metabolic Interplay between the Asian Citrus Psyllid and Its Profftella Symbiont: An Achilles’ Heel of the Citrus Greening Insect Vector

by Ramsey, John S., Johnson, Richard S., Hoki, Jason S., Kruse, Angela, Mahoney, Jaclyn, Hilf, Mark E., Hunter, Wayne B., Hall, David G., Schroeder, Frank C., MacCoss, Michael J., Cilia, Michelle
Published 2015

Human Valacyclovir Hydrolase/Biphenyl Hydrolase-Like Protein Is a Highly Efficient Homocysteine Thiolactonase

by Marsillach, Judit, Suzuki, Stephanie M., Richter, Rebecca J., McDonald, Matthew G., Rademacher, Peter M., MacCoss, Michael J., Hsieh, Edward J., Rettie, Allan E., Furlong, Clement E.
Published 2014

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline: APPLICATION TO PROTEIN ACETYLATION AND PHOSPHORYLATION*

by Schilling, Birgit, Rardin, Matthew J., MacLean, Brendan X., Zawadzka, Anna M., Frewen, Barbara E., Cusack, Michael P., Sorensen, Dylan J., Bereman, Michael S., Jing, Enxuan, Wu, Christine C., Verdin, Eric, Kahn, C. Ronald, MacCoss, Michael J., Gibson, Bradford W.
Published 2012

Multiplexed MS/MS for Improved Data Independent Acquisition

by Egertson, Jarrett D., Kuehn, Andreas, Merrihew, Gennifer E., Bateman, Nicholas W., MacLean, Brendan X., Ting, Ying S., Canterbury, Jesse D., Marsh, Donald M., Kellmann, Markus, Zabrouskov, Vlad, Wu, Christine C., MacCoss, Michael J.
Published 2013

Altered proteome turnover and remodeling by short-term caloric restriction or rapamycin rejuvenate the aging heart

by Dai, Dao-Fu, Karunadharma, Pabalu P, Chiao, Ying A, Basisty, Nathan, Crispin, David, Hsieh, Edward J, Chen, Tony, Gu, Haiwei, Djukovic, Danijel, Raftery, Daniel, Beyer, Richard P, MacCoss, Michael J, Rabinovitch, Peter S
Published 2014