A scale-space method for detecting recurrent DNA copy number changes with analytical false discovery rate control

by van Dyk, Ewald, Reinders, Marcel J.T., Wessels, Lodewyk F.A.
Published 2013

OncoScape: Exploring the cancer aberration landscape by genomic data fusion

by Schlicker, Andreas, Michaut, Magali, Rahman, Rubayte, Wessels, Lodewyk F. A.
Published 2016

A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence

by Canisius, Sander, Martens, John W. M., Wessels, Lodewyk F. A.
Published 2016

Module-Based Outcome Prediction Using Breast Cancer Compendia

by van Vliet, Martin H., Klijn, Christiaan N., Wessels, Lodewyk F. A., Reinders, Marcel J. T.
Published 2007

Identifying subgroup markers in heterogeneous populations

by de Ronde, Jorma J., Rigaill, Guillem, Rottenberg, Sven, Rodenhuis, Sjoerd, Wessels, Lodewyk F. A.
Published 2013

Current composite-feature classification methods do not outperform simple single-genes classifiers in breast cancer prognosis

by Staiger, Christine, Cadot, Sidney, Györffy, Balázs, Wessels, Lodewyk F. A., Klau, Gunnar W.
Published 2013

Breast Cancer Subtype Specific Classifiers of Response to Neoadjuvant Chemotherapy Do Not Outperform Classifiers Trained on All Subtypes

by de Ronde, Jorma J., Bonder, Marc Jan, Lips, Esther H., Rodenhuis, Sjoerd, Wessels, Lodewyk F. A.
Published 2014

Timely deposition of macromolecular structures is necessary for peer review

by Joosten, Robbie P., Soueidan, Hayssam, Wessels, Lodewyk F. A., Perrakis, Anastassis
Published 2013

BCM: toolkit for Bayesian analysis of Computational Models using samplers

by Thijssen, Bram, Dijkstra, Tjeerd M. H., Heskes, Tom, Wessels, Lodewyk F. A.
Published 2016

Applications of DNA integrating elements: Facing the bias bully

by de Jong, Johann, Wessels, Lodewyk F A, van Lohuizen, Maarten, de Ridder, Jeroen, Akhtar, Waseem
Published 2015

A multilevel pan-cancer map links gene mutations to cancer hallmarks

by Knijnenburg, Theo A., Bismeijer, Tycho, Wessels, Lodewyk F. A., Shmulevich, Ilya
Published 2015

RUBIC identifies driver genes by detecting recurrent DNA copy number breaks

by van Dyk, Ewald, Hoogstraat, Marlous, ten Hoeve, Jelle, Reinders, Marcel J. T., Wessels, Lodewyk F. A.
Published 2016

Targeting the RB-E2F pathway in breast cancer

by Johnson, Jackie, Thijssen, Bram, McDermott, Ultan, Garnett, Mathew, Wessels, Lodewyk F.A., Bernards, René
Published 2016

A Critical Evaluation of Network and Pathway-Based Classifiers for Outcome Prediction in Breast Cancer

by Staiger, Christine, Cadot, Sidney, Kooter, Raul, Dittrich, Marcus, Müller, Tobias, Klau, Gunnar W., Wessels, Lodewyk F. A.
Published 2012

Integration of Clinical and Gene Expression Data Has a Synergetic Effect on Predicting Breast Cancer Outcome

by van Vliet, Martin H., Horlings, Hugo M., van de Vijver, Marc J., Reinders, Marcel J. T., Wessels, Lodewyk F. A.
Published 2012

Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy

by Knijnenburg, Theo A., Klau, Gunnar W., Iorio, Francesco, Garnett, Mathew J., McDermott, Ultan, Shmulevich, Ilya, Wessels, Lodewyk F. A.
Published 2016

Chromatin Landscapes of Retroviral and Transposon Integration Profiles

by de Jong, Johann, Akhtar, Waseem, Badhai, Jitendra, Rust, Alistair G., Rad, Roland, Hilkens, John, Berns, Anton, van Lohuizen, Maarten, Wessels, Lodewyk F. A., de Ridder, Jeroen
Published 2014

Multiscale Representation of Genomic Signals

by Knijnenburg, Theo A., Ramsey, Stephen A., Berman, Benjamin P., Kennedy, Kathleen A., Smit, Arian F.A., Wessels, Lodewyk F.A., Laird, Peter W., Aderem, Alan, Shmulevich, Ilya
Published 2014

Androgen receptor DNA binding and chromatin accessibility profiling in prostate cancer

by Nevedomskaya, Ekaterina, Stelloo, Suzan, van der Poel, Henk G., de Jong, Jeroen, Wessels, Lodewyk F.A., Bergman, Andries M., Zwart, Wilbert
Published 2015

Lack of Genomic Heterogeneity at High-Resolution aCGH between Primary Breast Cancers and Their Paired Lymph Node Metastases

by Vollebergh, Marieke A., Klijn, Christiaan, Schouten, Philip C., Wesseling, Jelle, Israeli, Danielle, Ylstra, Bauke, Wessels, Lodewyk F.A., Jonkers, Jos, Linn, Sabine C.
Published 2014