GOsummaries: an R Package for Visual Functional Annotation of Experimental Data

by Kolde, Raivo, Vilo, Jaak
Published 2015

Robust rank aggregation for gene list integration and meta-analysis

by Kolde, Raivo, Laur, Sven, Adler, Priit, Vilo, Jaak
Published 2012

seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data

by Kolde, Raivo, Märtens, Kaspar, Lokk, Kaie, Laur, Sven, Vilo, Jaak
Published 2016

Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data

by Chen, Yun, Jørgensen, Mette, Kolde, Raivo, Zhao, Xiaobei, Parker, Brian, Valen, Eivind, Wen, Jiayu, Sandelin, Albin
Published 2011

Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells

by Tserel, Liina, Kolde, Raivo, Rebane, Ana, Kisand, Kai, Org, Tõnis, Peterson, Hedi, Vilo, Jaak, Peterson, Pärt
Published 2010

Estimating differential expression from multiple indicators

by Ilmjärv, Sten, Hundahl, Christian Ansgar, Reimets, Riin, Niitsoo, Margus, Kolde, Raivo, Vilo, Jaak, Vasar, Eero, Luuk, Hendrik
Published 2014

Methylation Markers of Early-Stage Non-Small Cell Lung Cancer

by Lokk, Kaie, Vooder, Tõnu, Kolde, Raivo, Välk, Kristjan, Võsa, Urmo, Roosipuu, Retlav, Milani, Lili, Fischer, Krista, Koltsina, Marina, Urgard, Egon, Annilo, Tarmo, Metspalu, Andres, Tõnisson, Neeme
Published 2012

Design Principles of Concentration-Dependent Transcriptome Deviations in Drug-Exposed Differentiating Stem Cells

by Waldmann, Tanja, Rempel, Eugen, Balmer, Nina V., König, André, Kolde, Raivo, Gaspar, John Antonydas, Henry, Margit, Hescheler, Jürgen, Sachinidis, Agapios, Rahnenführer, Jörg, Hengstler, Jan G., Leist, Marcel
Published 2014

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

by Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K, Vilo, Jaak, Salumets, Andres, Tõnisson, Neeme
Published 2014

Age-related profiling of DNA methylation in CD8+ T cells reveals changes in immune response and transcriptional regulator genes

by Tserel, Liina, Kolde, Raivo, Limbach, Maia, Tretyakov, Konstantin, Kasela, Silva, Kisand, Kai, Saare, Mario, Vilo, Jaak, Metspalu, Andres, Milani, Lili, Peterson, Pärt
Published 2015

Erratum to: DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

by Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K., Vilo, Jaak, Salumets, Andres, Tönisson, Neeme
Published 2016

From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effe...

by Balmer, Nina V., Klima, Stefanie, Rempel, Eugen, Ivanova, Violeta N., Kolde, Raivo, Weng, Matthias K., Meganathan, Kesavan, Henry, Margit, Sachinidis, Agapios, Berthold, Michael R., Hengstler, Jan G., Rahnenführer, Jörg, Waldmann, Tanja, Leist, Marcel
Published 2014

The FunGenES Database: A Genomics Resource for Mouse Embryonic Stem Cell Differentiation

by Schulz, Herbert, Kolde, Raivo, Adler, Priit, Aksoy, Irène, Anastassiadis, Konstantinos, Bader, Michael, Billon, Nathalie, Boeuf, Hélène, Bourillot, Pierre-Yves, Buchholz, Frank, Dani, Christian, Doss, Michael Xavier, Forrester, Lesley, Gitton, Murielle, Henrique, Domingos, Hescheler, Jürgen, Himmelbauer, Heinz, Hübner, Norbert, Karantzali, Efthimia, Kretsovali, Androniki, Lubitz, Sandra, Pradier, Laurent, Rai, Meena, Reimand, Jüri, Rolletschek, Alexandra, Sachinidis, Agapios, Savatier, Pierre, Stewart, Francis, Storm, Mike P., Trouillas, Marina, Vilo, Jaak, Welham, Melanie J., Winkler, Johannes, Wobus, Anna M., Hatzopoulos, Antonis K.
Published 2009

Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach

by Krug, Anne K., Kolde, Raivo, Gaspar, John A., Rempel, Eugen, Balmer, Nina V., Meganathan, Kesavan, Vojnits, Kinga, Baquié, Mathurin, Waldmann, Tanja, Ensenat-Waser, Roberto, Jagtap, Smita, Evans, Richard M., Julien, Stephanie, Peterson, Hedi, Zagoura, Dimitra, Kadereit, Suzanne, Gerhard, Daniel, Sotiriadou, Isaia, Heke, Michael, Natarajan, Karthick, Henry, Margit, Winkler, Johannes, Marchan, Rosemarie, Stoppini, Luc, Bosgra, Sieto, Westerhout, Joost, Verwei, Miriam, Vilo, Jaak, Kortenkamp, Andreas, Hescheler, Jürgen, Hothorn, Ludwig, Bremer, Susanne, van Thriel, Christoph, Krause, Karl-Heinz, Hengstler, Jan G., Rahnenführer, Jörg, Leist, Marcel, Sachinidis, Agapios
Published 2012