easyRNASeq: a bioconductor package for processing RNA-Seq data

by Delhomme, Nicolas, Padioleau, Ismaël, Furlong, Eileen E., Steinmetz, Lars M.
Published 2012

Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State

by Wilczynski, Bartek, Liu, Ya-Hsin, Yeo, Zhen Xuan, Furlong, Eileen E. M.
Published 2012

Subtle Changes in Motif Positioning Cause Tissue-Specific Effects on Robustness of an Enhancer's Activity

by Erceg, Jelena, Saunders, Timothy E., Girardot, Charles, Devos, Damien P., Hufnagel, Lars, Furlong, Eileen E. M.
Published 2014

Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers

by Girardot, Charles, Scholtalbers, Jelle, Sauer, Sajoscha, Su, Shu-Yi, Furlong, Eileen E.M.
Published 2016

FourCSeq: analysis of 4C sequencing data

by Klein, Felix A., Pakozdi, Tibor, Anders, Simon, Ghavi-Helm, Yad, Furlong, Eileen E. M., Huber, Wolfgang
Published 2015

Ultrasensitive proteome analysis using paramagnetic bead technology

by Hughes, Christopher S, Foehr, Sophia, Garfield, David A, Furlong, Eileen E, Steinmetz, Lars M, Krijgsveld, Jeroen
Published 2014

Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis

by Ciglar, Lucia, Girardot, Charles, Wilczyński, Bartek, Braun, Martina, Furlong, Eileen E. M.
Published 2014

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes

by Mbodj, Abibatou, Gustafson, E. Hilary, Ciglar, Lucia, Junion, Guillaume, Gonzalez, Aitor, Girardot, Charles, Perrin, Laurent, Furlong, Eileen E. M., Thieffry, Denis
Published 2016

Next-generation sequencing-based detection of germline L1-mediated transductions

by Tica, Jelena, Lee, Eunjung, Untergasser, Andreas, Meiers, Sascha, Garfield, David A., Gokcumen, Omer, Furlong, Eileen E.M., Park, Peter J., Stütz, Adrian M., Korbel, Jan O.
Published 2016

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

by Cannavò, Enrico, Khoueiry, Pierre, Garfield, David A., Geeleher, Paul, Zichner, Thomas, Gustafson, E. Hilary, Ciglar, Lucia, Korbel, Jan O., Furlong, Eileen E.M.
Published 2016

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

by Nitta, Kazuhiro R, Jolma, Arttu, Yin, Yimeng, Morgunova, Ekaterina, Kivioja, Teemu, Akhtar, Junaid, Hens, Korneel, Toivonen, Jarkko, Deplancke, Bart, Furlong, Eileen E M, Taipale, Jussi
Published 2015

4DXpress: a database for cross-species expression pattern comparisons

by Haudry, Yannick, Berube, Hugo, Letunic, Ivica, Weeber, Paul-Daniel, Gagneur, Julien, Girardot, Charles, Kapushesky, Misha, Arendt, Detlev, Bork, Peer, Brazma, Alvis, Furlong, Eileen E. M., Wittbrodt, Joachim, Henrich, Thorsten
Published 2008