Transcription Factor NKX6.3 Sheds Light on Gastric Cancer Progression

by Testa, Alison C., Forrest, Alistair R.R.
Published 2016

MiR-107 and MiR-185 Can Induce Cell Cycle Arrest in Human Non Small Cell Lung Cancer Cell Lines

by Takahashi, Yukari, Forrest, Alistair R. R., Maeno, Emi, Hashimoto, Takehiro, Daub, Carsten O., Yasuda, Jun
Published 2009

CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

by Hasegawa, Yuki, Tang, Dave, Takahashi, Naoko, Hayashizaki, Yoshihide, Forrest, Alistair R. R., the FANTOM consortium, Suzuki, Harukazu
Published 2014

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs

by Arenillas, David J., Forrest, Alistair R. R., Kawaji, Hideya, Lassmann, Timo, Wasserman, Wyeth W., Mathelier, Anthony
Published 2016

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome

by Hurst, Laurence D., Ghanbarian, Avazeh T., Forrest, Alistair R. R., Huminiecki, Lukasz
Published 2015

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

by Haberle, Vanja, Forrest, Alistair R.R., Hayashizaki, Yoshihide, Carninci, Piero, Lenhard, Boris
Published 2015

CORRIGENDUM: CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes

by Hasegawa, Yuki, Tang, Dave, Takahashi, Naoko, Hayashizaki, Yoshihide, Forrest, Alistair R. R., the FANTOM consortium, Suzuki, Harukazu
Published 2014

Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease

by Carrieri, Claudia, Forrest, Alistair R. R., Santoro, Claudio, Persichetti, Francesca, Carninci, Piero, Zucchelli, Silvia, Gustincich, Stefano
Published 2015

The Evolution of Human Cells in Terms of Protein Innovation

by Sardar, Adam J., Oates, Matt E., Fang, Hai, Forrest, Alistair R.R., Kawaji, Hideya, Gough, Julian, Rackham, Owen J.L.
Published 2014

Automated Workflow for Preparation of cDNA for Cap Analysis of Gene Expression on a Single Molecule Sequencer

by Itoh, Masayoshi, Kojima, Miki, Nagao-Sato, Sayaka, Saijo, Eri, Lassmann, Timo, Kanamori-Katayama, Mutsumi, Kaiho, Ai, Lizio, Marina, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide
Published 2012

LRRN4 and UPK3B Are Markers of Primary Mesothelial Cells

by Kanamori-Katayama, Mutsumi, Kaiho, Ai, Ishizu, Yuri, Okamura-Oho, Yuko, Hino, Okio, Abe, Masaaki, Kishimoto, Takumi, Sekihara, Hisahiko, Nakamura, Yukio, Suzuki, Harukazu, Forrest, Alistair R. R., Hayashizaki, Yoshihide
Published 2011

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions

by Davis, Margaret R., Andersson, Robin, Severin, Jessica, de Hoon, Michiel, Bertin, Nicolas, Baillie, J. Kenneth, Kawaji, Hideya, Sandelin, Albin, Forrest, Alistair R.R., Summers, Kim M.
Published 2014

Ceruloplasmin Is a Novel Adipokine Which Is Overexpressed in Adipose Tissue of Obese Subjects and in Obesity-Associated Cancer Cells

by Arner, Erik, Forrest, Alistair R. R., Ehrlund, Anna, Mejhert, Niklas, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Laurencikiene, Jurga, Rydén, Mikael, Arner, Peter
Published 2014

A draft network of ligand–receptor-mediated multicellular signalling in human

by Ramilowski, Jordan A., Goldberg, Tatyana, Harshbarger, Jayson, Kloppman, Edda, Lizio, Marina, Satagopam, Venkata P., Itoh, Masayoshi, Kawaji, Hideya, Carninci, Piero, Rost, Burkhard, Forrest, Alistair R. R.
Published 2015

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

by Yu, Nancy Yiu-Lin, Hallström, Björn M., Fagerberg, Linn, Ponten, Fredrik, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair R. R., FANTOM Consortium, The, Hayashizaki, Yoshihide, Uhlén, Mathias, Daub, Carsten O.
Published 2015

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line

by Lizio, Marina, Ishizu, Yuri, Itoh, Masayoshi, Lassmann, Timo, Hasegawa, Akira, Kubosaki, Atsutaka, Severin, Jessica, Kawaji, Hideya, Nakamura, Yukio, Suzuki, Harukazu, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R.
Published 2015

Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human

by Ramilowski, Jordan A., Goldberg, Tatyana, Harshbarger, Jayson, Kloppmann, Edda, Lizio, Marina, Satagopam, Venkata P., Itoh, Masayoshi, Kawaji, Hideya, Carninci, Piero, Rost, Burkhard, Forrest, Alistair R. R.
Published 2016

A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation

by Tomaru, Yasuhiro, Hasegawa, Ryota, Suzuki, Takahiro, Sato, Taiji, Kubosaki, Atsutaka, Suzuki, Masanori, Kawaji, Hideya, Forrest, Alistair R.R., Hayashizaki, Yoshihide, Shin, Jay W., Suzuki, Harukazu
Published 2014

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

by Ienasescu, Hans, Li, Kang, Andersson, Robin, Vitezic, Morana, Rennie, Sarah, Chen, Yun, Vitting-Seerup, Kristoffer, Lagoni, Emil, Boyd, Mette, Bornholdt, Jette, de Hoon, Michiel J. L., Kawaji, Hideya, Lassmann, Timo, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Carninci, Piero, Sandelin, Albin
Published 2016

Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis

by Horie, Masafumi, Yamaguchi, Yoko, Saito, Akira, Nagase, Takahide, Lizio, Marina, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Carninci, Piero, Forrest, Alistair R. R., Hayashizaki, Yoshihide, Suzutani, Tatsuo, Kappert, Kai, Micke, Patrick, Ohshima, Mitsuhiro
Published 2016