Validation of Skeletal Muscle cis-Regulatory Module Predictions Reveals Nucleotide Composition Bias in Functional Enhancers

by Kwon, Andrew T., Chou, Alice Yi, Arenillas, David J., Wasserman, Wyeth W.
Published 2011

oPOSSUM: integrated tools for analysis of regulatory motif over-representation

by Ho Sui, Shannan J., Fulton, Debra L., Arenillas, David J., Kwon, Andrew T., Wasserman, Wyeth W.
Published 2007

oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets

by Kwon, Andrew T., Arenillas, David J., Hunt, Rebecca Worsley, Wasserman, Wyeth W.
Published 2012

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs

by Arenillas, David J., Forrest, Alistair R. R., Kawaji, Hideya, Lassmann, Timo, Wasserman, Wyeth W., Mathelier, Anthony
Published 2016

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas

by Mathelier, Anthony, Lefebvre, Calvin, Zhang, Allen W, Arenillas, David J, Ding, Jiarui, Wasserman, Wyeth W, Shah, Sohrab P
Published 2015

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

by Ho Sui, Shannan J., Mortimer, James R., Arenillas, David J., Brumm, Jochen, Walsh, Christopher J., Kennedy, Brian P., Wasserman, Wyeth W.
Published 2005

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

by Mathelier, Anthony, Zhao, Xiaobei, Zhang, Allen W., Parcy, François, Worsley-Hunt, Rebecca, Arenillas, David J., Buchman, Sorana, Chen, Chih-yu, Chou, Alice, Ienasescu, Hans, Lim, Jonathan, Shyr, Casper, Tan, Ge, Zhou, Michelle, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W.
Published 2014

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses

by Chen, Chih-yu, Shi, Wenqiang, Balaton, Bradley P., Matthews, Allison M., Li, Yifeng, Arenillas, David J., Mathelier, Anthony, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R., Brown, Carolyn J., Wasserman, Wyeth W.
Published 2016

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

by Mathelier, Anthony, Fornes, Oriol, Arenillas, David J., Chen, Chih-yu, Denay, Grégoire, Lee, Jessica, Shi, Wenqiang, Shyr, Casper, Tan, Ge, Worsley-Hunt, Rebecca, Zhang, Allen W., Parcy, François, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W.
Published 2016

PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina

by Hickmott, Jack W, Chen, Chih-yu, Arenillas, David J, Korecki, Andrea J, Lam, Siu Ling, Molday, Laurie L, Bonaguro, Russell J, Zhou, Michelle, Chou, Alice Y, Mathelier, Anthony, Boye, Sanford L, Hauswirth, William W, Molday, Robert S, Wasserman, Wyeth W, Simpson, Elizabeth M
Published 2016