Atypical AT Skew in Firmicute Genomes Results from Selection and Not from Mutation

by Charneski, Catherine A., Honti, Frank, Bryant, Josephine M., Hurst, Laurence D., Feil, Edward J.
Published 2011

Comment on: Characterization of the embB gene in Mycobacterium tuberculosis isolates from Barcelona and rapid detection of main mutations related to ethambutol resistance using a l...

by Köser, Claudio U., Bryant, Josephine M., Comas, Iñaki, Feuerriegel, Silke, Niemann, Stefan, Gagneux, Sebastien, Parkhill, Julian, Peacock, Sharon J.
Published 2014

The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex

by Bentley, Stephen D., Comas, Iñaki, Bryant, Josephine M., Walker, Danielle, Smith, Noel H., Harris, Simon R., Thurston, Scott, Gagneux, Sebastien, Wood, Jonathan, Antonio, Martin, Quail, Michael A., Gehre, Florian, Adegbola, Richard A., Parkhill, Julian, de Jong, Bouke C.
Published 2012

Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data

by Bryant, Josephine M, Schürch, Anita C, van Deutekom, Henk, Harris, Simon R, de Beer, Jessica L, de Jager, Victor, Kremer, Kristin, van Hijum, Sacha A F T, Siezen, Roland J, Borgdorff, Martien, Bentley, Stephen D, Parkhill, Julian, van Soolingen, Dick
Published 2013

Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study

by Bryant, Josephine M, Grogono, Dorothy M, Greaves, Daniel, Foweraker, Juliet, Roddick, Iain, Inns, Thomas, Reacher, Mark, Haworth, Charles S, Curran, Martin D, Harris, Simon R, Peacock, Sharon J, Parkhill, Julian, Floto, R Andres
Published 2013

Detection of Low Frequency Multi-Drug Resistance and Novel Putative Maribavir Resistance in Immunocompromised Pediatric Patients with Cytomegalovirus

by Houldcroft, Charlotte J., Bryant, Josephine M., Depledge, Daniel P., Margetts, Ben K., Simmonds, Jacob, Nicolaou, Stephanos, Tutill, Helena J., Williams, Rachel, Worth, Austen J. J., Marks, Stephen D., Veys, Paul, Whittaker, Elizabeth, Breuer, Judith
Published 2016

Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis

by Bryant, Josephine M., Thibault, Virginie C., Smith, David G. E., McLuckie, Joyce, Heron, Ian, Sevilla, Iker A., Biet, Franck, Harris, Simon R., Maskell, Duncan J., Bentley, Stephen D., Parkhill, Julian, Stevenson, Karen
Published 2016

Genomic Investigations Unmask Mycoplasma amphoriforme, a New Respiratory Pathogen

by Gillespie, Stephen H., Ling, Clare L., Oravcova, Katarina, Pinheiro, Miguel, Wells, Louise, Bryant, Josephine M., McHugh, Timothy D., Bébéar, Cecile, Webster, David, Harris, Simon R., Seth-Smith, Helena M. B., Thomson, Nicholas R.
Published 2015

Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study

by Bryant, Josephine M, Harris, Simon R, Parkhill, Julian, Dawson, Rodney, Diacon, Andreas H, van Helden, Paul, Pym, Alex, Mahayiddin, Aziah A, Chuchottaworn, Charoen, Sanne, Ian M, Louw, Cheryl, Boeree, Martin J, Hoelscher, Michael, McHugh, Timothy D, Bateson, Anna L C, Hunt, Robert D, Mwaigwisya, Solomon, Wright, Laura, Gillespie, Stephen H, Bentley, Stephen D
Published 2013