Benchmarking tools for the alignment of functional noncoding DNA

by Pollard, Daniel A, Bergman, Casey M, Stoye, Jens, Celniker, Susan E, Eisen, Michael B
Published 2004

Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP)

by Hoskins, Roger A., Stapleton, Mark, George, Reed A., Yu, Charles, Wan, Kenneth H., Carlson, Joseph W., Celniker, Susan E.
Published 2005

Computational Identification of Diverse Mechanisms Underlying Transcription Factor-DNA Occupancy

by Cheng, Qiong, Kazemian, Majid, Pham, Hannah, Blatti, Charles, Celniker, Susan E., Wolfe, Scot A., Brodsky, Michael H., Sinha, Saurabh
Published 2013

A Drosophila full-length cDNA resource

by Stapleton, Mark, Carlson, Joe, Brokstein, Peter, Yu, Charles, Champe, Mark, George, Reed, Guarin, Hannibal, Kronmiller, Brent, Pacleb, Joanne, Park, Soo, Wan, Ken, Rubin, Gerald M, Celniker, Susan E
Published 2002

Systematic determination of patterns of gene expression during Drosophila embryogenesis

by Tomancak, Pavel, Beaton, Amy, Weiszmann, Richard, Kwan, Elaine, Shu, ShengQiang, Lewis, Suzanna E, Richards, Stephen, Ashburner, Michael, Hartenstein, Volker, Celniker, Susan E, Rubin, Gerald M
Published 2002

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobs...

by Berman, Benjamin P, Pfeiffer, Barret D, Laverty, Todd R, Salzberg, Steven L, Rubin, Gerald M, Eisen, Michael B, Celniker, Susan E
Published 2004

Correction: Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials

by Kazemian, Majid, Blatti, Charles, Richards, Adam, McCutchan, Michael, Wakabayashi-Ito, Noriko, Hammonds, Ann S., Celniker, Susan E., Kumar, Sudhir, Wolfe, Scot A., Brodsky, Michael H., Sinha, Saurabh
Published 2013

Spatial expression of transcription factors in Drosophila embryonic organ development

by Hammonds, Ann S, Bristow, Christopher A, Fisher, William W, Weiszmann, Richard, Wu, Siqi, Hartenstein, Volker, Kellis, Manolis, Yu, Bin, Frise, Erwin, Celniker, Susan E
Published 2013

Genome-guided transcript assembly from integrative analysis of RNA sequence data

by Boley, Nathan, Stoiber, Marcus H., Booth, Benjamin W., Wan, Kenneth H., Hoskins, Roger A., Bickel, Peter J., Celniker, Susan E., Brown, James B.
Published 2014

Identification of genetic factors that modify motor performance and body weight using Collaborative Cross mice

by Mao, Jian-Hua, Langley, Sasha A., Huang, Yurong, Hang, Michael, Bouchard, Kristofer E., Celniker, Susan E., Brown, James B., Jansson, Janet K., Karpen, Gary H., Snijders, Antoine M.
Published 2015

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

by Thomas, Sean, Li, Xiao-Yong, Sabo, Peter J, Sandstrom, Richard, Thurman, Robert E, Canfield, Theresa K, Giste, Erika, Fisher, William, Hammonds, Ann, Celniker, Susan E, Biggin, Mark D, Stamatoyannopoulos, John A
Published 2011

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

by Kaminker, Joshua S, Bergman, Casey M, Kronmiller, Brent, Carlson, Joseph, Svirskas, Robert, Patel, Sandeep, Frise, Erwin, Wheeler, David A, Lewis, Suzanna E, Rubin, Gerald M, Ashburner, Michael, Celniker, Susan E
Published 2002

Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

by Li, Xiao-yong, MacArthur, Stewart, Bourgon, Richard, Nix, David, Pollard, Daniel A, Iyer, Venky N, Hechmer, Aaron, Simirenko, Lisa, Stapleton, Mark, Hendriks, Cris L. Luengo, Chu, Hou Cheng, Ogawa, Nobuo, Inwood, William, Sementchenko, Victor, Beaton, Amy, Weiszmann, Richard, Celniker, Susan E, Knowles, David W, Gingeras, Tom, Speed, Terence P, Eisen, Michael B, Biggin, Mark D
Published 2008

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

by Hoskins, Roger A, Smith, Christopher D, Carlson, Joseph W, Carvalho, A Bernardo, Halpern, Aaron, Kaminker, Joshua S, Kennedy, Cameron, Mungall, Chris J, Sullivan, Beth A, Sutton, Granger G, Yasuhara, Jiro C, Wakimoto, Barbara T, Myers, Eugene W, Celniker, Susan E, Rubin, Gerald M, Karpen, Gary H
Published 2002

Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome

by Bergman, Casey M, Pfeiffer, Barret D, Rincón-Limas, Diego E, Hoskins, Roger A, Gnirke, Andreas, Mungall, Chris J, Wang, Adrienne M, Kronmiller, Brent, Pacleb, Joanne, Park, Soo, Stapleton, Mark, Wan, Kenneth, George, Reed A, de Jong, Pieter J, Botas, Juan, Rubin, Gerald M, Celniker, Susan E
Published 2002

DNA copy number evolution in Drosophila cell lines

by Lee, Hangnoh, McManus, C Joel, Cho, Dong-Yeon, Eaton, Matthew, Renda, Fioranna, Somma, Maria Patrizia, Cherbas, Lucy, May, Gemma, Powell, Sara, Zhang, Dayu, Zhan, Lijun, Resch, Alissa, Andrews, Justen, Celniker, Susan E, Cherbas, Peter, Przytycka, Teresa M, Gatti, Maurizio, Oliver, Brian, Graveley, Brenton, MacAlpine, David
Published 2014

Long-read, whole-genome shotgun sequence data for five model organisms

by Kim, Kristi E, Peluso, Paul, Babayan, Primo, Yeadon, P. Jane, Yu, Charles, Fisher, William W, Chin, Chen-Shan, Rapicavoli, Nicole A, Rank, David R, Li, Joachim, Catcheside, David E. A, Celniker, Susan E, Phillippy, Adam M, Bergman, Casey M, Landolin, Jane M
Published 2014

Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence

by Celniker, Susan E, Wheeler, David A, Kronmiller, Brent, Carlson, Joseph W, Halpern, Aaron, Patel, Sandeep, Adams, Mark, Champe, Mark, Dugan, Shannon P, Frise, Erwin, Hodgson, Ann, George, Reed A, Hoskins, Roger A, Laverty, Todd, Muzny, Donna M, Nelson, Catherine R, Pacleb, Joanne M, Park, Soo, Pfeiffer, Barret D, Richards, Stephen, Sodergren, Erica J, Svirskas, Robert, Tabor, Paul E, Wan, Kenneth, Stapleton, Mark, Sutton, Granger G, Venter, Craig, Weinstock, George, Scherer, Steven E, Myers, Eugene W, Gibbs, Richard A, Rubin, Gerald M
Published 2002

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review

by Misra, Sima, Crosby, Madeline A, Mungall, Christopher J, Matthews, Beverley B, Campbell, Kathryn S, Hradecky, Pavel, Huang, Yanmei, Kaminker, Joshua S, Millburn, Gillian H, Prochnik, Simon E, Smith, Christopher D, Tupy, Jonathan L, Whitfield, Eleanor J, Bayraktaroglu, Leyla, Berman, Benjamin P, Bettencourt, Brian R, Celniker, Susan E, de Grey, Aubrey DNJ, Drysdale, Rachel A, Harris, Nomi L, Richter, John, Russo, Susan, Schroeder, Andrew J, Shu, ShengQiang, Stapleton, Mark, Yamada, Chihiro, Ashburner, Michael, Gelbart, William M, Rubin, Gerald M, Lewis, Suzanna E
Published 2002

Diversity and dynamics of the Drosophila transcriptome

by Brown, James B., Boley, Nathan, Eisman, Robert, May, Gemma E., Stoiber, Marcus H., Duff, Michael O., Booth, Ben W., Wen, Jiayu, Park, Soo, Suzuki, Ana Maria, Wan, Kenneth H., Yu, Charles, Zhang, Dayu, Carlson, Joseph W., Cherbas, Lucy, Eads, Brian D., Miller, David, Mockaitis, Keithanne, Roberts, Johnny, Davis, Carrie A., Frise, Erwin, Hammonds, Ann S., Olson, Sara, Shenker, Sol, Sturgill, David, Samsonova, Anastasia A., Weiszmann, Richard, Robinson, Garret, Hernandez, Juan, Andrews, Justen, Bickel, Peter J., Carninci, Piero, Cherbas, Peter, Gingeras, Thomas R., Hoskins, Roger A., Kaufman, Thomas C., Lai, Eric C., Oliver, Brian, Perrimon, Norbert, Graveley, Brenton R., Celniker, Susan E.
Published 2014