Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies

by Dececchi, T. Alexander, Balhoff, James P., Lapp, Hilmar, Mabee, Paula M.
Published 2015

Corrigenda: Mullins PL, Kawada R, Balhoff JP, Deans AR (2012) A revision of Evaniscus (Hymenoptera, Evaniidae) using ontology-based semantic phenotype annotation. ZooKeys 223: 1–38...

by Mullins, Patricia L., Kawada, Rico, Balhoff, James P., Deans, Andrew R.
Published 2013

A Semantic Model for Species Description Applied to the Ensign Wasps (Hymenoptera: Evaniidae) of New Caledonia

by Balhoff, James P., Mikó, István, Yoder, Matthew J., Mullins, Patricia L., Deans, Andrew R.
Published 2013

A revision of Evaniscus (Hymenoptera, Evaniidae) using ontology-based semantic phenotype annotation

by Mullins, Patricia L., Kawada, Ricardo, Balhoff, James P., Deans, Andrew R.
Published 2012

Folding Wings like a Cockroach: A Review of Transverse Wing Folding Ensign Wasps (Hymenoptera: Evaniidae: Afrevania and Trissevania)

by Mikó, István, Copeland, Robert S., Balhoff, James P., Yoder, Matthew J., Deans, Andrew R.
Published 2014

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

by Balhoff, James P, Dahdul, Wasila M, Dececchi, T Alexander, Lapp, Hilmar, Mabee, Paula M, Vision, Todd J
Published 2014

Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment

by Bertone, Matthew A., Mikó, István, Yoder, Matthew J., Seltmann, Katja C., Balhoff, James P., Deans, Andrew R.
Published 2013

NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata

by Vos, Rutger A., Balhoff, James P., Caravas, Jason A., Holder, Mark T., Lapp, Hilmar, Maddison, Wayne P., Midford, Peter E., Priyam, Anurag, Sukumaran, Jeet, Xia, Xuhua, Stoltzfus, Arlin
Published 2012

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

by Edmunds, Richard C., Su, Baofeng, Balhoff, James P., Eames, B. Frank, Dahdul, Wasila M., Lapp, Hilmar, Lundberg, John G., Vision, Todd J., Dunham, Rex A., Mabee, Paula M., Westerfield, Monte
Published 2016

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

by Midford, Peter E, Dececchi, Thomas Alex, Balhoff, James P, Dahdul, Wasila M, Ibrahim, Nizar, Lapp, Hilmar, Lundberg, John G, Mabee, Paula M, Sereno, Paul C, Westerfield, Monte, Vision, Todd J, Blackburn, David C
Published 2013

A Unified Anatomy Ontology of the Vertebrate Skeletal System

by Dahdul, Wasila M., Balhoff, James P., Blackburn, David C., Diehl, Alexander D., Haendel, Melissa A., Hall, Brian K., Lapp, Hilmar, Lundberg, John G., Mungall, Christopher J., Ringwald, Martin, Segerdell, Erik, Van Slyke, Ceri E., Vickaryous, Matthew K., Westerfield, Monte, Mabee, Paula M.
Published 2012

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

by Druzinsky, Robert E., Balhoff, James P., Crompton, Alfred W., Done, James, German, Rebecca Z., Haendel, Melissa A., Herrel, Anthony, Herring, Susan W., Lapp, Hilmar, Mabee, Paula M., Muller, Hans-Michael, Mungall, Christopher J., Sternberg, Paul W., Van Auken, Kimberly, Vinyard, Christopher J., Williams, Susan H., Wall, Christine E.
Published 2016

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

by Haendel, Melissa A, Balhoff, James P, Bastian, Frederic B, Blackburn, David C, Blake, Judith A, Bradford, Yvonne, Comte, Aurelie, Dahdul, Wasila M, Dececchi, Thomas A, Druzinsky, Robert E, Hayamizu, Terry F, Ibrahim, Nizar, Lewis, Suzanna E, Mabee, Paula M, Niknejad, Anne, Robinson-Rechavi, Marc, Sereno, Paul C, Mungall, Christopher J
Published 2014

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

by Stoltzfus, Arlin, Lapp, Hilmar, Matasci, Naim, Deus, Helena, Sidlauskas, Brian, Zmasek, Christian M, Vaidya, Gaurav, Pontelli, Enrico, Cranston, Karen, Vos, Rutger, Webb, Campbell O, Harmon, Luke J, Pirrung, Megan, O'Meara, Brian, Pennell, Matthew W, Mirarab, Siavash, Rosenberg, Michael S, Balhoff, James P, Bik, Holly M, Heath, Tracy A, Midford, Peter E, Brown, Joseph W, McTavish, Emily Jane, Sukumaran, Jeet, Westneat, Mark, Alfaro, Michael E, Steele, Aaron, Jordan, Greg
Published 2013

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

by Arighi, Cecilia N., Carterette, Ben, Cohen, K. Bretonnel, Krallinger, Martin, Wilbur, W. John, Fey, Petra, Dodson, Robert, Cooper, Laurel, Van Slyke, Ceri E., Dahdul, Wasila, Mabee, Paula, Li, Donghui, Harris, Bethany, Gillespie, Marc, Jimenez, Silvia, Roberts, Phoebe, Matthews, Lisa, Becker, Kevin, Drabkin, Harold, Bello, Susan, Licata, Luana, Chatr-aryamontri, Andrew, Schaeffer, Mary L., Park, Julie, Haendel, Melissa, Van Auken, Kimberly, Li, Yuling, Chan, Juancarlos, Muller, Hans-Michael, Cui, Hong, Balhoff, James P., Chi-Yang Wu, Johnny, Lu, Zhiyong, Wei, Chih-Hsuan, Tudor, Catalina O., Raja, Kalpana, Subramani, Suresh, Natarajan, Jeyakumar, Cejuela, Juan Miguel, Dubey, Pratibha, Wu, Cathy
Published 2013

Finding Our Way through Phenotypes

by Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Laurel D., Courtot, Mélanie, Csösz, Sándor, Cui, Hong, Dahdul, Wasila, Das, Sandip, Dececchi, T. Alexander, Dettai, Agnes, Diogo, Rui, Druzinsky, Robert E., Dumontier, Michel, Franz, Nico M., Friedrich, Frank, Gkoutos, George V., Haendel, Melissa, Harmon, Luke J., Hayamizu, Terry F., He, Yongqun, Hines, Heather M., Ibrahim, Nizar, Jackson, Laura M., Jaiswal, Pankaj, James-Zorn, Christina, Köhler, Sebastian, Lecointre, Guillaume, Lapp, Hilmar, Lawrence, Carolyn J., Le Novère, Nicolas, Lundberg, John G., Macklin, James, Mast, Austin R., Midford, Peter E., Mikó, István, Mungall, Christopher J., Oellrich, Anika, Osumi-Sutherland, David, Parkinson, Helen, Ramírez, Martín J., Richter, Stefan, Robinson, Peter N., Ruttenberg, Alan, Schulz, Katja S., Segerdell, Erik, Seltmann, Katja C., Sharkey, Michael J., Smith, Aaron D., Smith, Barry, Specht, Chelsea D., Squires, R. Burke, Thacker, Robert W., Thessen, Anne, Fernandez-Triana, Jose, Vihinen, Mauno, Vize, Peter D., Vogt, Lars, Wall, Christine E., Walls, Ramona L., Westerfeld, Monte, Wharton, Robert A., Wirkner, Christian S., Woolley, James B., Yoder, Matthew J., Zorn, Aaron M., Mabee, Paula
Published 2015