The Complete Chloroplast Genome of Banana (Musa acuminata, Zingiberales): Insight into Plastid Monocotyledon Evolution

by Martin, Guillaume, Baurens, Franc-Christophe, Cardi, Céline, Aury, Jean-Marc, D’Hont, Angélique
Published 2013

MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data

by Madoui, Mohammed-Amin, Dossat, Carole, d’Agata, Léo, van Oeveren, Jan, van der Vossen, Edwin, Aury, Jean-Marc
Published 2016

Genome assembly using Nanopore-guided long and error-free DNA reads

by Madoui, Mohammed-Amin, Engelen, Stefan, Cruaud, Corinne, Belser, Caroline, Bertrand, Laurie, Alberti, Adriana, Lemainque, Arnaud, Wincker, Patrick, Aury, Jean-Marc
Published 2015

In Silico Survey of the Mitochondrial Protein Uptake and Maturation Systems in the Brown Alga Ectocarpus siliculosus

by Delage, Ludovic, Leblanc, Catherine, Nyvall Collén, Pi, Gschloessl, Bernhard, Oudot, Marie-Pierre, Sterck, Lieven, Poulain, Julie, Aury, Jean-Marc, Cock, J. Mark
Published 2011

Survey of the green picoalga Bathycoccus genomes in the global ocean

by Vannier, Thomas, Leconte, Jade, Seeleuthner, Yoann, Mondy, Samuel, Pelletier, Eric, Aury, Jean-Marc, de Vargas, Colomban, Sieracki, Michael, Iudicone, Daniele, Vaulot, Daniel, Wincker, Patrick, Jaillon, Olivier
Published 2016

Recurrent Domestication by Lepidoptera of Genes from Their Parasites Mediated by Bracoviruses

by Gasmi, Laila, Boulain, Helene, Gauthier, Jeremy, Hua-Van, Aurelie, Musset, Karine, Jakubowska, Agata K., Aury, Jean-Marc, Volkoff, Anne-Nathalie, Huguet, Elisabeth, Herrero, Salvador, Drezen, Jean-Michel
Published 2015

Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20)

by Falentin, Hélène, Deutsch, Stéphanie-Marie, Loux, Valentin, Hammani, Amal, Buratti, Julien, Parayre, Sandrine, Chuat, Victoria, Barbe, Valérie, Aury, Jean-Marc, Jan, Gwenaël, Le Loir, Yves
Published 2016

Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods

by Martin, Guillaume, Baurens, Franc-Christophe, Droc, Gaëtan, Rouard, Mathieu, Cenci, Alberto, Kilian, Andrzej, Hastie, Alex, Doležel, Jaroslav, Aury, Jean-Marc, Alberti, Adriana, Carreel, Françoise, D’Hont, Angélique
Published 2016

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data

by Alberti, Adriana, Belser, Caroline, Engelen, Stéfan, Bertrand, Laurie, Orvain, Céline, Brinas, Laura, Cruaud, Corinne, Giraut, Laurène, Da Silva, Corinne, Firmo, Cyril, Aury, Jean-Marc, Wincker, Patrick
Published 2014

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

by Loux, Valentin, Mariadassou, Mahendra, Almeida, Sintia, Chiapello, Hélène, Hammani, Amal, Buratti, Julien, Gendrault, Annie, Barbe, Valérie, Aury, Jean-Marc, Deutsch, Stéphanie-Marie, Parayre, Sandrine, Madec, Marie-Noëlle, Chuat, Victoria, Jan, Gwenaël, Peterlongo, Pierre, Azevedo, Vasco, Le Loir, Yves, Falentin, Hélène
Published 2015

Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?

by Dumas, Pascaline, Legeai, Fabrice, Lemaitre, Claire, Scaon, Erwan, Orsucci, Marion, Labadie, Karine, Gimenez, Sylvie, Clamens, Anne-Laure, Henri, Hélène, Vavre, Fabrice, Aury, Jean-Marc, Fournier, Philippe, Kergoat, Gael J., d’Alençon, Emmanuelle
Published 2015

TE-Tracker: systematic identification of transposition events through whole-genome resequencing

by Gilly, Arthur, Etcheverry, Mathilde, Madoui, Mohammed-Amin, Guy, Julie, Quadrana, Leandro, Alberti, Adriana, Martin, Antoine, Heitkam, Tony, Engelen, Stefan, Labadie, Karine, Le Pen, Jeremie, Wincker, Patrick, Colot, Vincent, Aury, Jean-Marc
Published 2014

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

by Denoeud, France, Roussel, Michaël, Noel, Benjamin, Wawrzyniak, Ivan, Da Silva, Corinne, Diogon, Marie, Viscogliosi, Eric, Brochier-Armanet, Céline, Couloux, Arnaud, Poulain, Julie, Segurens, Béatrice, Anthouard, Véronique, Texier, Catherine, Blot, Nicolas, Poirier, Philippe, Ng, Geok Choo, Tan, Kevin SW, Artiguenave, François, Jaillon, Olivier, Aury, Jean-Marc, Delbac, Frédéric, Wincker, Patrick, Vivarès, Christian P, El Alaoui, Hicham
Published 2011

The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences

by Arnaiz, Olivier, Mathy, Nathalie, Baudry, Céline, Malinsky, Sophie, Aury, Jean-Marc, Denby Wilkes, Cyril, Garnier, Olivier, Labadie, Karine, Lauderdale, Benjamin E., Le Mouël, Anne, Marmignon, Antoine, Nowacki, Mariusz, Poulain, Julie, Prajer, Malgorzata, Wincker, Patrick, Meyer, Eric, Duharcourt, Sandra, Duret, Laurent, Bétermier, Mireille, Sperling, Linda
Published 2012

Complete DNA Sequence of Kuraishia capsulata Illustrates Novel Genomic Features among Budding Yeasts (Saccharomycotina)

by Morales, Lucia, Noel, Benjamin, Porcel, Betina, Marcet-Houben, Marina, Hullo, Marie-Francoise, Sacerdot, Christine, Tekaia, Fredj, Leh-Louis, Véronique, Despons, Laurence, Khanna, Varun, Aury, Jean-Marc, Barbe, Valérie, Couloux, Arnaud, Labadie, Karen, Pelletier, Eric, Souciet, Jean-Luc, Boekhout, Teun, Gabaldon, Toni, Wincker, Patrick, Dujon, Bernard
Published 2013

Recurrent DNA virus domestication leading to different parasite virulence strategies

by Pichon, Apolline, Bézier, Annie, Urbach, Serge, Aury, Jean-Marc, Jouan, Véronique, Ravallec, Marc, Guy, Julie, Cousserans, François, Thézé, Julien, Gauthier, Jérémy, Demettre, Edith, Schmieder, Sandra, Wurmser, François, Sibut, Vonick, Poirié, Marylène, Colinet, Dominique, da Silva, Corinne, Couloux, Arnaud, Barbe, Valérie, Drezen, Jean-Michel, Volkoff, Anne-Nathalie
Published 2015

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

by Lesur, Isabelle, Le Provost, Grégoire, Bento, Pascal, Da Silva, Corinne, Leplé, Jean-Charles, Murat, Florent, Ueno, Saneyoshi, Bartholomé, Jerôme, Lalanne, Céline, Ehrenmann, François, Noirot, Céline, Burban, Christian, Léger, Valérie, Amselem, Joelle, Belser, Caroline, Quesneville, Hadi, Stierschneider, Michael, Fluch, Silvia, Feldhahn, Lasse, Tarkka, Mika, Herrmann, Sylvie, Buscot, François, Klopp, Christophe, Kremer, Antoine, Salse, Jérôme, Aury, Jean-Marc, Plomion, Christophe
Published 2015

The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants

by Porcel, Betina M., Denoeud, France, Opperdoes, Fred, Noel, Benjamin, Madoui, Mohammed-Amine, Hammarton, Tansy C., Field, Mark C., Da Silva, Corinne, Couloux, Arnaud, Poulain, Julie, Katinka, Michael, Jabbari, Kamel, Aury, Jean-Marc, Campbell, David A., Cintron, Roxana, Dickens, Nicholas J., Docampo, Roberto, Sturm, Nancy R., Koumandou, V. Lila, Fabre, Sandrine, Flegontov, Pavel, Lukeš, Julius, Michaeli, Shulamit, Mottram, Jeremy C., Szöőr, Balázs, Zilberstein, Dan, Bringaud, Frédéric, Wincker, Patrick, Dollet, Michel
Published 2014

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

by Berthelot, Camille, Brunet, Frédéric, Chalopin, Domitille, Juanchich, Amélie, Bernard, Maria, Noël, Benjamin, Bento, Pascal, Da Silva, Corinne, Labadie, Karine, Alberti, Adriana, Aury, Jean-Marc, Louis, Alexandra, Dehais, Patrice, Bardou, Philippe, Montfort, Jérôme, Klopp, Christophe, Cabau, Cédric, Gaspin, Christine, Thorgaard, Gary H., Boussaha, Mekki, Quillet, Edwige, Guyomard, René, Galiana, Delphine, Bobe, Julien, Volff, Jean-Nicolas, Genêt, Carine, Wincker, Patrick, Jaillon, Olivier, Crollius, Hugues Roest, Guiguen, Yann
Published 2014